Protein

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Genbank accession
YP_011844054.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,90
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MQKLVRLTQKTSETNAKTSETNAKTSETNAAAYAAAAKTSETNAAASAASASDSKGFRDEAEAFAAQASTSALAAKNSEINTKTSEINSKASEDAAKLAQQGALGSANTATQAMTTTKGYRDEAEGFKNTATTAATTATDKALEAAGSATMAGEKAIAATNAADRAEIAAASAEQVTQASLKKDQNLKDLTDKVAARKELQIQAVVSKDSNNVGDYNSFTSPNVVYELRLANDGGWRVARNSDNATSALPIGAGGTGAENVEGAKINFGIDRLKQTETETMMYAPGINSPYRITIRPDAAWGVWTDETGRWIPLSIDAGGTGSNTEVGARKNLNTPVGGQAIAIPDNSNILGFMSTYAESGYYSSGELVTYQPPEASGWWMYELHVHRKNANGHVEYGNIVATTMNGNKWGIICTNGSWGEWYRIARSDRQLMLLSPDAQSALGDYSIAIGDHDSGLKWDSDGHISAFADSARIFAWTPSGINTYGTISSYVGDNIRGMYVNGTRRGDPNALIAGQVEGGAFSAWRSRASGLLVEHTSFDSAVNVFKSVYWGKDWISGMDSVKWSSGGAEVHLYVGGTEYIFDAAGNGSASNWVSRSDIRLKAHLKEIETASDKIDYLTGYTYYKRNNLIEDENSVYSIEAGLIAQDVERVLPEAVHSLNSDGKLDPKGEAIKGINYNGVVALLVNAFKEQKVKIDNQQEEINALRNELYELKNLVKSMLNGNAPTITELP
Physico‐chemical
properties
protein length:731 AA
molecular weight: 78140,31590 Da
isoelectric point:5,17624
aromaticity:0,07661
hydropathy:-0,43352

Domains

Domains [InterPro]
DC_1220
STR
1–731
DC_1220
IPR030392
CHP
597–702
IPR030392
IPR030392
CHP
597–657
IPR030392 Coil
YP_011844054.1
1 731
Architecture
STR
STR 1-731
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011844054.1
1 731
Domain Start End Length (AA) Confidence
N-terminal 1 111 111 0,6807
Central domain 112 310 200 0,4622
C-terminal 311 731 420 0,7079
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-111
Central
112-310
C-terminal
311-731

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB STyj5-1
[NCBI] 		2801510 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus STyj51
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011844054.1 [NCBI]
Genbank nucleotide accession
NC_103481.1 [NCBI]
CDS location
range 74235 -> 76430
strand -
CDS
ATGCAAAAACTAGTGAGACTAACGCAAAAAACTAGTGAAACTAATGCAAAAACTAGTGAGACTAACGCAAAAACTAGTGAGACTAATGCAGCAGCATATGCAGCAGCAGCAAAAACTAGCGAGACTAATGCTGCTGCTTCCGCTGCCTCTGCTTCTGACTCCAAAGGATTCAGGGATGAAGCAGAAGCATTCGCTGCACAAGCCTCCACATCAGCATTAGCAGCAAAAAACTCAGAAATTAATACAAAGACTAGCGAAATTAACTCAAAAGCTAGTGAAGACGCTGCTAAGCTAGCTCAGCAAGGTGCATTAGGTAGTGCGAATACAGCTACGCAAGCGATGACCACAACCAAAGGCTACAGAGACGAAGCAGAGGGATTTAAAAATACCGCCACTACTGCTGCAACGACAGCAACAGACAAGGCCCTGGAGGCTGCTGGTAGTGCTACAATGGCAGGAGAGAAAGCAATTGCAGCTACCAATGCAGCTGACAGAGCGGAAATAGCAGCTGCATCGGCAGAACAGGTTACGCAAGCGTCGTTGAAGAAGGATCAGAACCTTAAAGACCTTACTGATAAAGTTGCTGCAAGGAAGGAACTTCAAATTCAAGCGGTAGTGAGCAAGGACTCTAATAATGTGGGTGATTATAACTCATTCACCAGCCCCAATGTAGTATATGAACTTAGACTGGCTAATGATGGCGGTTGGCGTGTTGCAAGAAATAGTGATAATGCTACATCGGCTCTTCCTATTGGTGCTGGCGGTACTGGTGCGGAAAACGTTGAGGGTGCAAAAATAAACTTTGGCATTGATCGTTTAAAGCAAACAGAAACAGAAACTATGATGTACGCACCAGGGATTAACTCACCTTATCGAATCACAATTAGACCTGATGCGGCGTGGGGTGTTTGGACTGATGAAACTGGAAGATGGATTCCTCTTTCAATTGATGCTGGCGGCACTGGATCTAATACTGAAGTTGGCGCAAGAAAGAACTTAAACACTCCTGTTGGTGGTCAAGCAATTGCCATCCCGGATAATTCAAACATTCTTGGGTTTATGTCAACATACGCAGAAAGCGGTTATTACTCAAGCGGAGAACTTGTTACATATCAACCACCTGAAGCCTCTGGTTGGTGGATGTATGAATTGCATGTTCACCGTAAAAATGCAAACGGCCATGTTGAGTATGGAAATATTGTTGCAACCACAATGAACGGCAATAAATGGGGTATCATTTGCACTAATGGCTCTTGGGGTGAATGGTACAGGATAGCAAGATCTGATAGGCAATTGATGTTATTAAGTCCTGATGCTCAATCAGCTCTTGGTGATTACTCTATAGCAATTGGTGATCATGACTCTGGTTTGAAATGGGATAGTGATGGTCACATAAGCGCGTTTGCTGATTCAGCGAGAATATTTGCATGGACTCCATCAGGTATAAATACTTACGGGACCATATCCTCTTATGTTGGGGATAATATAAGGGGCATGTATGTAAATGGGACTAGGCGTGGAGATCCAAACGCGCTTATTGCTGGTCAAGTTGAGGGTGGTGCTTTTAGTGCGTGGCGTAGTCGTGCGTCTGGTTTGTTGGTAGAGCATACTAGTTTTGATTCGGCTGTCAACGTATTTAAATCTGTTTATTGGGGTAAGGATTGGATATCGGGAATGGATTCTGTTAAATGGTCCTCTGGAGGTGCTGAGGTTCATCTTTATGTTGGTGGAACTGAGTATATTTTTGATGCCGCTGGTAATGGTAGCGCCTCAAACTGGGTTAGTAGATCTGATATTAGATTGAAAGCGCATTTAAAAGAAATTGAAACCGCATCTGACAAAATTGATTATCTAACTGGTTATACTTACTACAAACGCAATAATCTAATTGAAGATGAAAACAGCGTTTATAGTATTGAGGCTGGATTGATTGCTCAAGATGTTGAAAGGGTTTTGCCTGAAGCGGTTCATTCTTTGAATAGTGATGGTAAGCTAGATCCAAAAGGTGAGGCAATCAAAGGTATTAACTATAATGGTGTTGTCGCACTTCTTGTTAACGCATTCAAAGAGCAAAAAGTAAAGATTGATAATCAACAGGAGGAAATTAACGCATTACGCAACGAGTTATATGAACTGAAAAACCTTGTAAAATCAATGCTTAACGGAAATGCTCCAACAATTACAGAACTACCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
af8d53baa27a77ea0f7239ce75734f29ecf63c3d34309183b7b9d491e4aba23d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7072
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence and characterization of vB STyj5-1 Wang,J. and Jing,Y. 2017-08-18 — GenBank