Protein

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Genbank accession
XDG30825.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,69
Protein sequence
MLLRNIPSDSWVSVNSLLGIPVGSKLDLVNQGQADLILTTSDTQPLSSFTGGKFLKEVESEQSRTTLRATSKELWVRSNSSTTTGILFVQEDSYPFTDFGGDLDPRVYTGNQGITTQPFTEANVKNGTQFTITEEIVITTGAPVVYRGFKTPNDSRDILVKTRIINTDGGMRYTPHSSQTGVVVGANKDSFIVNLNSKSSNTSGTSYYDITSVDTEGPFFDVIRSTNGTGSNRRQGIFSGLGIERVLDQDTEYLLKFENLDNKTIYVVFSITFYSGPLSVDII
Physico‐chemical
properties
protein length:283 AA
molecular weight: 31011,13590 Da
isoelectric point:4,84890
aromaticity:0,09187
hydropathy:-0,26784

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XDG30825.1
1 283
Domain Start End Length (AA) Confidence
N-terminal 1 279 279 0,4021
Central domain 280 279 1 0,0255
C-terminal 280 283 3 0,9208
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-279
Central
280-279
C-terminal
280-283

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage P018-4
[NCBI] 		3229728 Uroviricota > Caudoviricetes >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDG30825.1 [NCBI]
Genbank nucleotide accession
PP934186 [NCBI]
CDS location
range 39903 -> 40754
strand -
CDS
ATGTTGCTTAGAAACATCCCATCGGATAGTTGGGTCAGTGTCAACAGTTTGCTTGGTATTCCTGTAGGAAGTAAATTAGACTTGGTAAACCAAGGCCAAGCAGATTTAATTTTAACAACGTCAGATACACAACCCCTAAGTAGTTTTACAGGTGGTAAGTTTCTTAAGGAAGTGGAATCTGAACAAAGTAGGACAACTCTAAGAGCTACCTCAAAAGAGTTGTGGGTCAGAAGTAATAGCTCTACAACCACTGGTATTTTATTTGTACAAGAAGATAGTTACCCTTTCACTGATTTTGGCGGAGACTTAGACCCACGAGTTTACACTGGAAACCAAGGTATTACTACTCAACCGTTCACTGAGGCTAATGTAAAGAATGGTACTCAGTTCACTATCACTGAAGAAATAGTTATCACAACTGGAGCACCTGTTGTTTATCGTGGTTTCAAAACACCTAACGATAGTCGTGATATTCTTGTTAAAACTCGCATTATCAATACTGATGGAGGTATGCGTTATACACCTCACTCGTCTCAAACTGGTGTTGTAGTTGGCGCTAACAAAGACAGTTTTATTGTAAACTTAAACAGTAAATCTTCTAACACAAGTGGTACCTCTTACTACGATATTACATCTGTTGATACCGAAGGTCCATTCTTTGATGTGATAAGGTCTACCAATGGTACTGGTTCTAATCGGCGGCAGGGTATTTTCTCTGGTTTAGGTATTGAACGTGTACTTGATCAGGACACAGAATACTTACTTAAGTTTGAAAATCTAGACAACAAAACTATTTATGTTGTGTTCTCAATCACATTCTACTCTGGACCACTAAGTGTAGATATAATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
122955f0519ea18fb5f565c0f308a32624a8b690bbb3826b159d01b07ac7a9c5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7238
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50