Protein

View in Explore
Genbank accession
XLM30726.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MSQLLHLWDGLTGVVLPFAGATPPKNWLLCDGQAISRTLHAKLFSVIGTMFGAGDGTSTFNLPDLRGRVAAGKDNMGGTPANRLTTAGSGVDGPTLGAAGGNQAHTLTTAQMPAHGHTATDSGHGHSVYDPTHAHTVYDPGHSHQIDGWNLSAFDPSGGGYSVGADAPNSGASGAGQVAKSTTTGIGIYAAATGISIYNGTANISIGSQGGGGAHNNTQPTIVLNHIIRT
Physico‐chemical
properties
protein length:230 AA
molecular weight: 23085,16990 Da
isoelectric point:6,46858
aromaticity:0,05652
hydropathy:-0,16217

Domains

Domains [InterPro]
SSF88874
STR
8–229
SSF88874
IPR037053
ATT
9–66
IPR037053
IPR011083
ATT
13–69
IPR011083
XLM30726.1
1 230
Architecture
ATT
STR
ATT 8-69 | STR 70-229 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLM30726.1
1 230
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,5497
Central domain 11 205 196 0,0022
C-terminal 206 230 24 0,9979
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-205
C-terminal
206-230

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Alux-21
[NCBI] 		3383217 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLM30726.1 [NCBI]
Genbank nucleotide accession
PQ589898.1 [NCBI]
CDS location
range 30462 -> 31154
strand +
CDS
ATGAGTCAGTTACTTCATTTATGGGATGGCTTGACCGGCGTTGTGCTGCCTTTTGCGGGCGCAACGCCACCTAAAAACTGGTTGCTGTGTGATGGCCAAGCGATTAGCCGAACTTTGCACGCAAAACTGTTTTCAGTTATTGGCACAATGTTTGGAGCTGGTGATGGAACATCAACGTTCAATCTGCCAGACCTGCGCGGGCGTGTGGCTGCTGGTAAAGACAATATGGGCGGAACACCGGCTAACCGCCTGACCACGGCAGGTTCTGGCGTTGACGGTCCTACGCTTGGTGCCGCTGGAGGAAATCAGGCGCACACCCTGACCACTGCTCAGATGCCAGCGCACGGACACACTGCCACTGATTCTGGACACGGCCACAGCGTCTATGACCCAACGCACGCGCACACCGTTTATGATCCAGGGCACTCGCATCAGATTGATGGCTGGAATCTTAGTGCGTTTGACCCTTCTGGTGGCGGTTATTCAGTTGGCGCAGATGCGCCAAACAGCGGGGCAAGCGGCGCTGGACAGGTGGCAAAATCAACAACAACCGGCATTGGCATTTATGCAGCAGCCACCGGCATCAGCATTTACAACGGCACAGCAAACATTAGCATTGGAAGCCAGGGTGGCGGTGGCGCTCACAACAACACACAGCCCACCATCGTTTTAAATCACATTATCCGCACCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
9c2e2181c7a473b52084dd6fbf4d7c690b8d3cc1ef94929d0b9a167d0460d999
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7021
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a bacteriophage as a biological control agent against Escherichia coli in compost and agricultural irrigation water Amarillas,L., Estrada,M., Lightbourn,L., Leon,R. and Lopez-Avenano,E. 2024-12-16 — GenBank