Protein

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Genbank accession
YP_009043769.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPHPISYPVGTQDDDRTRSIDVVHIEPSIREGVHLVSSLYGPLASAPLYRFPPTNTFPPYLTGDPQIPSVLTCNSGQWAASPAAVLYYQWMADGVDIPGANGPTWTSTVEYDNTVITCEVRGANYLGEDYALTSNSIAISLIEPIELEEMENYFITGLNQGEKAQTVRDERTLVTSGIGALNRLDINRGVAYFTTGISALNRSDINASNYNFITGISQKDTLSVLERTFGIGVVNWDTGAPLVDGEPQPMNLKNPDAEAGLAGWETFGPVSYVGKYGGFTQSLDDVHAGNLTFFGGENTSPSTGNTPYTYMTQDVEIFPIWHADVDAGTTSVWINWFQHSESGADQANIRIEFYAANDTLLGVNDGPGLWASPSGIHFYRELVDTIPTGTRYIRIQAEFNWQLGDDTNAHIDTISMQIFKGSRGIGTDQGPDFNMWRLRFLTANTWSGGALSELEFRDTPGTIDLATGGQPVFGSAGNGVSNADAAFDDLRDTNYWAGAQNSISEGTSWVGYDFGTPVKPGEIEITARPGSNALQVPRTYMIEGSDDGIRWIPHHLVDQDFAGGDYNSGERRQILVPKGVFAYHKDTPGGAGFTASRQTNQFDDFPAKGNVFYCHSRLNITHLGALINDGTGLPFNYKLQLYRMNNQKDSIFSDGMVSEAVLESISGVANNAGGGVNSSYWADHACVNGPHHFEVGEMFMVYFIDMDAATNPENPNEARTWYFTNFGTETFKMARRIVTPLRTFNKFDTDDLVVGELGEGNSITDDWLWTLDFRGQIF
Physico‐chemical
properties
protein length:778 AA
molecular weight: 85315,18880 Da
isoelectric point:4,48809
aromaticity:0,11440
hydropathy:-0,32686

Domains

Domains [InterPro]
DC_1007
ATT
50–166
DC_1007 IPR000421
G3DSA:2.60.40.2700
RBD
52–135
G3DSA:2.60.40.2700 IPR008979
G3DSA:2.60.120.260
STR
475–604
G3DSA:2.60.120.260
IPR000421
RBD
477–568
IPR000421
YP_009043769.1
1 778
Architecture
ATT
RBD
STR
ATT 50-166 | RBD 457-467 | STR 468-604 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009043769.1
1 778
Domain Start End Length (AA) Confidence
N-terminal 1 429 429 0,6239
Central domain 430 628 200 0,2559
C-terminal 629 778 149 0,8936
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-429
Central
430-628
C-terminal
629-778

Taxonomy

  Name Taxonomy ID Lineage
Phage Dinoroseobacter phage DFL12phi1
[NCBI] 		1477404 Uroviricota > Caudoviricetes > Schitoviridae > Baltimorevirus > Baltimorevirus DFL12
Host Dinoroseobacter shibae
[NCBI] 		215813 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales
Host Dinoroseobacter shibae DFL 12 = DSM 16493
[NCBI] 		398580 Bacteria > Proteobacteria > Alphaproteobacteria > Rhodobacterales > Rhodobacteraceae > Dinoroseobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009043769.1 [NCBI]
Genbank nucleotide accession
NC_024367 [NCBI]
CDS location
range 1693 -> 4029
strand -
CDS
ATGCCTCATCCCATTTCATACCCTGTGGGGACTCAGGATGACGACCGTACTCGGTCCATCGACGTTGTTCATATCGAACCGTCGATCCGGGAAGGTGTGCATCTGGTCTCCAGCCTTTATGGACCGCTGGCTTCAGCGCCTCTGTATCGGTTCCCGCCTACGAACACCTTTCCACCATATCTGACTGGAGATCCTCAGATTCCCAGCGTACTCACCTGTAACTCAGGTCAGTGGGCTGCATCTCCGGCTGCCGTTCTCTACTATCAGTGGATGGCAGATGGTGTGGATATTCCCGGAGCCAATGGTCCAACTTGGACTTCCACTGTGGAATACGACAACACCGTGATCACCTGTGAAGTCCGAGGAGCGAACTATCTTGGTGAAGATTATGCTCTAACTTCCAACTCGATTGCGATCTCTTTGATTGAACCAATCGAATTAGAAGAGATGGAGAATTATTTCATCACTGGACTGAACCAAGGTGAGAAAGCTCAGACTGTTCGTGATGAACGTACTTTGGTTACGTCGGGTATTGGTGCTTTGAACCGTCTCGATATCAACCGAGGTGTTGCATACTTCACGACTGGTATTTCTGCTCTCAATCGTTCTGACATCAACGCTTCGAACTACAACTTCATTACTGGGATCTCCCAAAAAGATACCTTGTCTGTTTTGGAACGGACATTTGGAATTGGAGTGGTGAACTGGGATACTGGAGCACCTCTCGTTGATGGCGAACCTCAACCCATGAACCTCAAGAATCCAGATGCTGAAGCAGGTTTGGCAGGTTGGGAGACTTTTGGTCCTGTTAGTTATGTCGGGAAATATGGTGGCTTCACTCAGTCTCTTGATGATGTCCATGCCGGGAACCTGACTTTCTTTGGTGGTGAAAACACCAGTCCATCTACAGGTAATACCCCGTACACCTACATGACTCAGGATGTCGAAATCTTCCCGATCTGGCACGCAGATGTGGATGCAGGTACGACTTCGGTTTGGATCAATTGGTTCCAGCACAGTGAGTCTGGTGCTGACCAAGCCAACATTCGAATCGAATTCTATGCAGCCAATGATACGCTGCTGGGTGTCAATGATGGTCCGGGTCTTTGGGCATCTCCGAGCGGCATTCACTTCTATCGTGAACTCGTCGATACAATTCCGACCGGAACTCGGTACATCCGAATCCAAGCTGAATTCAACTGGCAGCTTGGTGATGACACGAATGCTCACATCGACACGATCTCCATGCAGATCTTCAAAGGATCTCGTGGAATTGGTACGGATCAAGGTCCAGACTTCAATATGTGGCGTCTTCGTTTCCTGACTGCGAACACTTGGTCTGGTGGTGCTCTCTCGGAACTCGAATTCCGTGACACACCGGGAACCATTGACCTTGCCACTGGTGGTCAGCCTGTATTCGGTTCTGCTGGTAACGGAGTCAGCAATGCTGATGCAGCCTTTGATGATCTTCGTGATACGAACTACTGGGCTGGCGCTCAGAACTCGATCTCGGAAGGTACGTCGTGGGTTGGATATGATTTTGGAACTCCCGTGAAACCGGGTGAAATCGAAATCACTGCACGTCCCGGATCCAATGCTCTTCAGGTTCCTCGCACCTATATGATCGAAGGTTCTGATGATGGTATCCGTTGGATTCCTCATCATCTCGTGGATCAGGACTTTGCAGGTGGTGATTACAACTCGGGTGAACGTCGTCAGATTCTGGTTCCCAAAGGAGTCTTTGCCTATCACAAAGATACTCCCGGAGGTGCAGGGTTTACCGCATCTCGTCAGACGAACCAGTTTGATGACTTCCCAGCCAAAGGGAATGTCTTCTACTGTCACTCTCGTTTGAACATCACCCACCTTGGTGCTCTGATCAATGACGGAACTGGGCTGCCATTCAACTACAAACTACAACTCTACCGGATGAACAATCAGAAGGATTCCATTTTCTCTGATGGTATGGTTTCGGAAGCAGTGTTGGAAAGCATCTCCGGAGTCGCCAACAATGCAGGTGGTGGAGTGAATAGCAGCTATTGGGCTGACCATGCTTGTGTGAATGGGCCTCACCACTTTGAAGTGGGTGAAATGTTCATGGTGTATTTCATTGATATGGATGCTGCCACGAATCCGGAAAATCCCAATGAAGCACGTACATGGTACTTCACCAACTTCGGAACTGAGACCTTCAAGATGGCTCGTCGAATCGTGACACCTCTGCGAACCTTCAACAAATTTGATACAGATGATCTGGTGGTTGGTGAACTCGGTGAAGGAAACAGCATCACTGATGATTGGCTCTGGACTCTGGATTTCAGGGGTCAGATCTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
77e010c53781f0437de62cec7d7db34c004924e504e7c93c387ac853d45dcc8d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6535
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage DFL12phi1, which infects Dinoroseobacter shibae Ji,J., Zhang,R. and Jiao,N. 2015-01-21 — GenBank