Protein

View in Explore
Genbank accession
WWO60370.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MHFRLFNKPAAFGIDQGKPRMWIDGIYEDYDAGDPYEGRVQIHGSVGLMKVEVLDSNLPPNASVFIDQTTKEVVVKWLKYSPPTVQVSEVPNGSFEDDSIWEMIGPGFPAKAEQGWSPNGKGNLTYRDQKGEYTVFGGWAPVSNRTRQIEITGKVEHGKSSKGNASCGVGLAWYNDKRELVRIDMGNIVSDGGKGNWYKTSGIYSADAPEVRFVRPVIRFNRRKQNHPIHAGQIEWDHVYEVGYNEDETLWVEVKVTDSTHNTAIHRGIIEENNIWLTSRPYPILQVDSSDPGMIFYAPELREIGRGVEDAEYAAPSIGVSVSMRELSSAVTTSVASTPAVSMSVAMKSVINVVPTVIDNSAPSTTFTAAMKRIAVDPGAETGNVTPSIKIGVTLT
Physico‐chemical
properties
protein length:396 AA
molecular weight: 43539,45190 Da
isoelectric point:5,48675
aromaticity:0,08838
hydropathy:-0,35303

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WWO60370.1
1 396
Domain Start End Length (AA) Confidence
N-terminal 1 178 178 0,4943
Central domain 179 385 208 0,1505
C-terminal 386 396 10 0,7816
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-178
Central
179-385
C-terminal
386-396

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage SB2
[NCBI] 		3117468 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WWO60370.1 [NCBI]
Genbank nucleotide accession
PP079416.1 [NCBI]
CDS location
range 36044 -> 37234
strand +
CDS
ATGCACTTCCGTTTGTTCAACAAGCCCGCCGCCTTCGGGATCGACCAAGGCAAGCCGCGCATGTGGATCGACGGGATTTACGAAGACTACGATGCAGGCGATCCCTACGAGGGTCGCGTGCAGATTCACGGCTCTGTAGGTCTGATGAAGGTCGAGGTTCTGGACAGCAACCTGCCGCCCAACGCCTCGGTCTTCATCGACCAGACTACCAAGGAGGTCGTGGTTAAGTGGTTGAAGTACAGCCCGCCGACCGTACAGGTTTCCGAAGTCCCTAACGGTTCGTTCGAGGACGACTCGATCTGGGAGATGATCGGCCCCGGCTTCCCAGCTAAGGCGGAGCAGGGCTGGAGCCCAAACGGTAAGGGAAACCTGACGTACCGGGATCAGAAGGGGGAGTACACCGTCTTCGGTGGCTGGGCCCCTGTGTCCAATCGTACGCGACAGATCGAGATTACCGGCAAGGTGGAGCACGGGAAGTCCTCTAAGGGGAACGCGTCCTGCGGCGTCGGCCTTGCATGGTACAACGACAAGCGCGAACTGGTCCGGATCGACATGGGCAACATCGTCAGCGATGGTGGTAAGGGCAACTGGTACAAGACCAGTGGCATCTACTCTGCGGACGCACCTGAAGTTCGATTCGTGCGGCCGGTCATCCGGTTCAATCGTAGGAAGCAGAACCACCCGATCCACGCTGGTCAGATTGAATGGGACCATGTGTACGAGGTTGGGTACAACGAAGACGAGACTCTGTGGGTCGAGGTCAAGGTCACGGACTCCACGCATAACACTGCAATCCATCGCGGCATTATCGAGGAGAACAACATCTGGCTGACCTCACGACCGTACCCCATCTTGCAGGTCGACTCGTCTGACCCGGGCATGATCTTCTATGCGCCAGAGTTGCGTGAGATTGGGCGCGGTGTAGAGGATGCCGAGTACGCAGCACCGTCTATCGGCGTGTCCGTAAGCATGCGTGAACTGTCGTCCGCTGTCACCACCTCGGTGGCATCCACTCCGGCGGTATCCATGTCCGTCGCTATGAAGTCCGTCATCAACGTCGTTCCCACTGTCATCGACAACTCTGCACCTAGCACCACTTTCACTGCCGCCATGAAGCGAATCGCAGTTGATCCGGGCGCAGAGACGGGTAACGTAACCCCAAGCATCAAGATTGGAGTAACGCTCACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1cd7f60db39576016de316cb8289067cb4b7f2d41a48f5a69efe3e3e528e9332
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6411
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel lytic viruses for Xanthomonas sp. and Stenotrophomonas maltophilia Petrzik,K., Brazdova,S., Sovova,L. and Neoralova,M. 2023-07-17 — GenBank