Protein

View in Explore
Genbank accession
XLQ31046.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNMALKRTEAYGSGMGGKSGGGSATEEKNTLLSNATAYLLDFVSQGPIKGLVNSNKSIFFDGVPLENQDGTRNFSGLDYDWRIGEENQAPNRLIEATESEIGVNIEVTSANGPVTRAVEEENIDAFRVRVRIPSLMQAKDNGDIVAHSVTYSIMWAPAGSGNFQHIPGSPFTLSGKNSSPYYQDHTFYPPTPGPWDVRMRRDSADETSVKKSSETWFDAIVGILNQKMIYPWSAYFAWKVNAEQFGSSLPKRTYEIYGRIVRVPTNYNPETRTYTGLWDGSFKLAYTDCPPWILLDLLTNTRYGGQITDDKIDIAALYKIAKYCDEYVPNGRGQLEPRYTLNVCINTQSQAYTLINNILSNFRTMLFWQGGQFSFSQDAPNTEHAVLVGPSNTENGFFSYTSSTDKSRANIIYVQYANENNQDKPDFEIVNDNKDVVKRGPKIVRITAYGCRSQSQARRHGEWLRYTLNHDTEKVSYVAGIDHEAVRPGDIVAIADPLKSSTRQSSGRLISTTANTVTLDRTVDLNQNVTYQIALTDIDGNIQYRDLQTFANNITQLGLASPIDPTKFNTNAVWIIYRKDTGTRKYRVTSISEKGGKRIISALLYNPSKFAYVERDQPLTPQPVDPFVGGDIAPPRYFTYTRAEIALGGTANRVDCLVSWTYPENERRITAFELQYADNSDDPAWETVYRGRDTSYMIRNILGAETTKALRIKSIGPDPNKDFSPWITISNIELFSRAVQPASPTNLQVLALSYGKGIRVSWLPFTPPADFWHVEVWRSLTENLNQAVLVGTSTDGTFTDNELEPGQAYYYWVRTRVRTDNPSKQYSLYMGPQTIAALPPPLTDVLDDSITSQKIKDAAILAEKIAAGAVTGNAIAVDAVGATHIAANAITAKQLVLTDFTNLVRNGTFDVADAATMNAVWSFTGGPFLGTDNDDDVTGFWATNVDVQTGAFAIVMDRPSYASGDPASSISMESKDFLAVNPNEVWRWEVQGRATQTLATAGFYMDVMWYTSDKTLAGVSTVVNNSAWPNFFSTAKSGKVTVPANAQFCKIRLRHTNQNMVARAYIVDRITFRRANAAELIVDGSIIAAHMSANSVTASAISVTNLSSINSNLGIITGGSLNIANNFMVSSSGNVTIRSGATGQRMEISNSLIRVYDANNVERVRLGIW
Physico‐chemical
properties
protein length:1169 AA
molecular weight: 129211,13310 Da
isoelectric point:5,78731
aromaticity:0,10009
hydropathy:-0,32575

Domains

Domains [InterPro]
IPR053171
Unmapped
18–823
IPR053171 DC_2243
DC_0129
STR
28–922
DC_0129
IPR055385
ATT
97–224
IPR055385 IPR032876 IPR013783 IPR036116
IPR013783
STR
739–830
IPR013783
IPR003961
STR
741–816
IPR003961
IPR003961
STR
741–823
IPR003961
IPR003961
STR
743–841
IPR003961
XLQ31046.1
1 1169
Architecture
STR
ATT
STR
ATT
STR
RBD
STR 28-96 | ATT 97-224 | STR 225-347 | ATT 348-503 | STR 504-922 | RBD 1136-1169
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLQ31046.1
1 1169
Domain Start End Length (AA) Confidence
N-terminal 1 12 12 0,9405
Central domain 13 211 200 0,0454
C-terminal 212 1169 957 0,1931
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-12
Central
13-211
C-terminal
212-1169

Taxonomy

  Name Taxonomy ID Lineage
Phage Agrobacterium phage JP1
[NCBI] 		3386826 Viruses >
Host Agrobacterium tumefaciens
[NCBI] 		358 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLQ31046.1 [NCBI]
Genbank nucleotide accession
PQ741606.1 [NCBI]
CDS location
range 30106 -> 33615
strand +
CDS
ATGAACATGGCTCTCAAGAGAACCGAAGCTTACGGCTCAGGTATGGGCGGCAAATCTGGCGGTGGATCGGCAACGGAGGAAAAGAACACGCTTCTTTCCAACGCTACCGCTTACCTGCTCGATTTCGTGTCGCAGGGACCTATCAAGGGTCTGGTGAATTCCAATAAGTCCATCTTCTTCGATGGTGTCCCCCTTGAGAACCAAGACGGAACCCGGAACTTCAGTGGCCTCGATTACGATTGGCGTATCGGTGAAGAGAACCAAGCGCCTAACCGCTTGATTGAAGCTACGGAAAGCGAGATTGGCGTAAACATAGAGGTAACCAGCGCCAATGGCCCGGTCACCCGTGCCGTCGAAGAAGAGAACATCGACGCATTCCGCGTACGAGTTCGTATCCCTTCGCTTATGCAGGCCAAGGACAACGGCGACATCGTTGCGCACAGCGTAACTTACTCTATCATGTGGGCACCGGCAGGATCGGGTAACTTCCAGCATATCCCCGGTTCCCCGTTTACGCTCAGCGGGAAGAACAGCAGCCCTTACTATCAGGATCACACGTTCTACCCGCCAACTCCGGGGCCGTGGGACGTTCGTATGCGCCGCGATAGCGCGGATGAAACTTCGGTAAAGAAGTCGAGCGAAACGTGGTTCGATGCCATCGTCGGCATTCTTAACCAGAAGATGATTTACCCATGGTCGGCGTACTTCGCATGGAAGGTAAACGCGGAACAGTTCGGTTCCTCGCTGCCGAAGCGCACGTACGAGATTTACGGTCGTATCGTCCGTGTCCCGACAAACTACAATCCCGAAACCCGCACGTACACCGGCCTTTGGGATGGATCGTTCAAGCTCGCCTATACCGATTGCCCCCCATGGATTTTGCTCGATCTGCTAACCAACACTCGGTATGGCGGGCAGATAACCGATGACAAGATCGATATCGCTGCGCTCTACAAGATCGCCAAATACTGCGACGAATACGTGCCGAACGGCAGGGGCCAGCTAGAGCCTCGCTACACCCTGAACGTCTGCATCAATACGCAGTCGCAGGCGTACACGCTCATCAACAATATCCTGTCCAACTTCCGCACCATGCTTTTCTGGCAGGGCGGGCAGTTTTCATTCTCGCAGGATGCCCCCAACACCGAACACGCAGTTCTCGTCGGCCCGTCGAACACGGAGAACGGCTTTTTCAGCTATACCAGCAGCACGGACAAGAGCCGCGCCAACATCATCTATGTTCAGTACGCGAACGAGAACAACCAAGACAAACCCGATTTCGAGATCGTCAACGACAACAAGGACGTGGTAAAGCGCGGACCTAAGATCGTTCGTATCACGGCGTATGGATGCCGCAGCCAATCGCAAGCCCGAAGACACGGGGAATGGTTGCGGTATACACTCAATCACGACACGGAGAAGGTTTCCTACGTAGCCGGTATTGACCACGAAGCGGTGAGGCCGGGGGATATCGTCGCCATCGCGGACCCGCTAAAGAGTTCAACCCGGCAATCTTCCGGTCGATTGATAAGCACCACTGCGAACACCGTCACCCTTGACCGAACGGTTGATCTAAACCAGAACGTTACCTACCAGATCGCGCTTACGGACATCGACGGAAACATCCAGTACCGCGACTTGCAAACGTTTGCAAACAACATAACGCAGCTTGGTCTCGCGTCCCCGATTGATCCAACAAAGTTCAATACAAACGCGGTCTGGATCATTTACCGGAAAGACACGGGTACGCGTAAGTACCGCGTAACCTCGATCTCGGAAAAGGGCGGCAAGCGCATCATTAGCGCGTTGCTATACAACCCCTCCAAGTTCGCATACGTGGAGCGCGATCAGCCCCTCACCCCGCAGCCGGTCGATCCGTTCGTGGGCGGGGATATTGCACCTCCCCGGTATTTCACCTACACCCGCGCAGAAATCGCACTCGGGGGGACGGCTAACCGCGTCGATTGCCTTGTGTCGTGGACGTACCCTGAGAACGAAAGGCGTATTACCGCGTTCGAACTTCAGTACGCGGATAACAGCGACGATCCTGCATGGGAAACGGTATACCGTGGCCGCGACACGTCATACATGATACGGAACATCCTCGGGGCGGAAACCACGAAAGCGTTGCGCATAAAATCCATCGGTCCCGATCCGAACAAGGATTTCTCCCCGTGGATCACGATCAGCAATATCGAATTGTTTTCCCGAGCCGTACAGCCTGCGTCACCGACTAACCTTCAGGTGCTGGCGCTTTCCTACGGCAAGGGCATCCGCGTATCGTGGCTCCCATTTACCCCGCCTGCCGATTTCTGGCACGTCGAGGTGTGGAGATCGTTGACCGAAAACCTCAATCAAGCCGTTCTCGTCGGAACGTCTACGGATGGTACGTTTACCGACAACGAACTTGAGCCGGGACAGGCGTACTACTATTGGGTGAGAACCCGTGTCCGCACGGATAACCCATCCAAGCAGTATTCGCTCTATATGGGTCCGCAAACCATCGCGGCACTGCCGCCACCGCTCACTGACGTTCTGGACGATAGTATCACGTCGCAGAAGATCAAAGACGCGGCTATCCTCGCGGAAAAGATCGCAGCCGGTGCCGTTACCGGAAACGCCATTGCCGTAGACGCCGTTGGTGCTACGCATATCGCTGCGAACGCGATCACGGCTAAGCAGCTTGTCCTTACCGACTTCACCAACTTGGTGCGAAACGGTACGTTTGACGTTGCTGACGCGGCCACGATGAACGCAGTATGGTCGTTTACCGGGGGTCCGTTCCTTGGCACGGATAACGATGACGACGTAACAGGCTTTTGGGCAACCAACGTTGACGTACAAACCGGCGCGTTCGCAATCGTCATGGATCGCCCTAGCTACGCATCCGGCGACCCGGCCAGTTCGATATCGATGGAAAGCAAGGACTTCTTGGCCGTGAACCCGAACGAGGTATGGCGCTGGGAAGTACAGGGGAGAGCCACGCAAACCCTCGCCACCGCAGGCTTCTACATGGATGTCATGTGGTATACCTCGGATAAGACACTCGCCGGGGTAAGTACCGTTGTAAACAACAGTGCTTGGCCTAACTTCTTCTCTACGGCTAAATCTGGAAAGGTAACCGTCCCTGCGAACGCGCAGTTCTGCAAGATCAGGCTCCGTCACACCAACCAGAATATGGTAGCCCGAGCATACATCGTTGACCGCATCACCTTCCGTCGCGCCAATGCGGCTGAGTTGATCGTTGACGGTAGCATTATCGCTGCGCACATGTCTGCTAACTCGGTTACCGCGTCTGCGATCTCAGTCACGAACCTGTCTTCGATCAACTCTAACTTGGGTATCATTACCGGGGGGTCGCTAAACATCGCCAATAACTTTATGGTATCAAGTTCGGGTAACGTGACTATCCGAAGCGGTGCTACCGGACAAAGAATGGAAATATCAAACTCTTTGATCCGGGTATACGACGCAAACAACGTGGAGCGAGTTCGTCTCGGGATTTGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
361481dc3aac99f5b4b3b3a97afbea0ed6f51e4afc111ac19d8158a228d273fe
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2658
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50