Protein

View in Explore
Genbank accession
YP_004893855.1 [GenBank]
Protein name
colanic acid degradation
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADLLPTVKVSDLPTATESFEGDYLVVDQSDATRKSTWSDMFSRFGLMRLFSFQEGGTLVSPKDQVIDRSTNRIYQWTGAYPKLVPADSTPETTGGVGEGAWSANDPSLRGDLAGANGSTFIGGPAGTVAQSLDGFVTPAQFMGKYPTTTEAVTALAAYAKENKKAVLAWGWNLVLETSVYIDGVEWYGGSFNQTGGNRYMYLSNSTFRWVTFTGVCTRHYGGRLIITDSSWVNNTNTAAMLLQALPIEGTIDILDSDFRGCKYGILQQGTGALVTRARFARLNFNDLTGDAIECNVVQRHYKAGGLTIEDINIDNINNTDNSPNWGIGIGVAGQGPYGANASDDQYVSGIIIRNVKMRRVRQCIHFELCRDFKVENVEVYPDASVSNGTLLASGGVVCYGCKDYIIDGVRGEMVNGATRFIYFGWGVNQGTFAAPCRDFTLRNVRTHTGLVDIPVSAMDDWTNDVKVEDIECHTFKYRGLVSKLRLADIRCKQFDGIGDYEAGQGEAGGAMKRWAWCSAEIININSLDDNGVANGKFGQVGFDHLTTYGCNFDVVQHSKTNGNRGVILLNAGNIYISDNDDFPQGKEFVKGDIILKKTGGMFVVETGGSYIEPNDFIKATVVGSKTIECAADSSIRQPWATRAFKSAGLQLTIPGAGPGGADLQTTVIRAPYQKGAWITPFYLDIADPIQTATPDNTALVSTNPVVYSERT
Physico‐chemical
properties
protein length:712 AA
molecular weight: 77278,79790 Da
isoelectric point:5,10649
aromaticity:0,10112
hydropathy:-0,19565

Domains

Domains [InterPro]
DC_1918
ATT
1–330
DC_1918 IPR011050
G3DSA:2.10.10.80
ATT
48–115
G3DSA:2.10.10.80 DC_0045
IPR040775
RBD
52–103
IPR040775
YP_004893855.1
1 712
Architecture
ATT
STR
RBD
ATT 1-330 | STR 346-475 | RBD 476-712
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004893855.1
1 712
Domain Start End Length (AA) Confidence
N-terminal 1 147 147 0,9943
Central domain 148 579 433 0,9910
C-terminal 580 712 132 0,9762
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-147
Central
148-579
C-terminal
580-712

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PVPSE1
[NCBI] 		889338 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004893855.1 [NCBI]
Genbank nucleotide accession
NC_016071 [NCBI]
CDS location
range 32759 -> 34897
strand -
CDS
ATGGCAGATCTATTACCTACCGTCAAGGTCTCAGACTTACCGACTGCGACGGAATCTTTCGAGGGAGACTACCTGGTTGTTGACCAGTCGGATGCAACCCGTAAATCAACATGGTCAGATATGTTCTCCCGTTTCGGGTTGATGCGCCTGTTTTCCTTCCAAGAAGGGGGGACGCTTGTCTCCCCCAAAGATCAGGTGATCGACAGATCAACCAACAGGATCTATCAATGGACAGGGGCATACCCGAAACTTGTTCCTGCCGACTCCACACCGGAGACTACAGGTGGTGTTGGTGAAGGGGCGTGGTCAGCTAACGACCCATCTCTACGTGGAGACCTTGCAGGTGCTAATGGCTCAACCTTTATCGGTGGACCAGCGGGAACAGTGGCTCAATCACTCGATGGTTTTGTTACCCCTGCACAATTCATGGGGAAATATCCAACAACGACAGAGGCTGTAACAGCGTTAGCTGCATACGCAAAAGAGAACAAAAAAGCTGTTCTTGCATGGGGATGGAACCTTGTTCTTGAGACAAGTGTGTATATCGACGGTGTTGAATGGTATGGTGGAAGCTTTAACCAGACTGGCGGCAACAGATACATGTATTTATCAAACAGCACATTCCGCTGGGTGACCTTCACAGGTGTTTGTACTCGCCATTATGGTGGGCGTCTGATCATTACAGACTCCTCATGGGTTAACAATACCAACACCGCAGCGATGTTACTACAAGCCCTCCCTATAGAAGGTACAATTGACATTCTGGATAGTGATTTCAGAGGTTGTAAATATGGTATCCTTCAGCAAGGTACAGGCGCTCTTGTTACTCGCGCACGTTTTGCCCGTCTCAACTTTAACGATTTGACAGGCGATGCTATTGAGTGTAACGTTGTACAGAGACACTATAAAGCGGGTGGTTTGACAATCGAAGATATTAACATCGACAACATCAACAATACAGATAACTCTCCTAACTGGGGTATTGGTATCGGTGTTGCGGGGCAGGGACCGTATGGTGCTAACGCCTCTGATGACCAATATGTTAGTGGGATCATCATTCGTAACGTTAAGATGCGTCGAGTTCGTCAATGTATCCACTTCGAGCTTTGCCGTGACTTTAAGGTCGAGAACGTTGAGGTTTATCCTGATGCATCCGTTTCTAACGGAACACTGCTGGCATCCGGTGGTGTCGTATGTTATGGTTGCAAAGACTATATCATTGATGGTGTTCGTGGCGAAATGGTCAACGGTGCTACCCGATTCATTTATTTTGGGTGGGGTGTTAACCAAGGAACCTTTGCTGCTCCGTGCCGTGACTTTACACTGCGAAATGTACGTACTCATACGGGACTGGTAGATATTCCAGTTAGTGCTATGGATGACTGGACCAACGATGTGAAGGTTGAGGACATTGAGTGCCACACTTTCAAATATCGCGGTCTTGTCTCAAAACTTCGTCTTGCTGACATCCGCTGTAAACAGTTTGATGGTATTGGCGACTATGAGGCTGGACAGGGTGAGGCAGGCGGGGCGATGAAGCGTTGGGCTTGGTGTTCTGCTGAGATCATTAATATCAATAGCCTTGATGATAATGGTGTCGCTAACGGTAAGTTCGGTCAGGTAGGCTTTGACCACTTAACAACATACGGTTGTAACTTCGATGTGGTTCAGCACTCAAAGACAAACGGAAACAGAGGTGTCATACTGCTTAATGCTGGTAACATCTATATCTCTGATAATGATGATTTTCCTCAAGGAAAGGAATTCGTTAAAGGGGACATCATTCTGAAGAAGACTGGTGGTATGTTTGTTGTTGAGACAGGGGGTTCTTACATTGAACCTAATGATTTCATCAAGGCAACTGTGGTTGGCTCAAAAACGATTGAGTGTGCAGCAGATTCAAGTATCCGACAACCTTGGGCTACTCGTGCATTTAAATCTGCTGGGTTGCAACTCACCATCCCAGGCGCAGGCCCCGGTGGTGCGGATCTCCAGACAACGGTTATAAGAGCGCCATATCAAAAAGGTGCTTGGATCACACCGTTCTATCTGGACATTGCAGATCCAATCCAGACAGCCACACCTGATAACACGGCTCTTGTTTCGACAAATCCCGTAGTATACAGCGAAAGGACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
eaed804d64c8cef6e564e0ba893356b86255740e69f76b88c1531261d2e401e9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7390
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50