Protein

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Genbank accession
YP_009854112.1 [GenBank]
Protein name
baseplate hub subunit and tail lysozyme
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MNICSDLKWFFGIVEEHKKPTLAKVRIFGVHNIDPNLLPTENLPEASIMKGTNSSNINGLGESTTGLWEGSFIFGFSIDEAYTNIYIVGTLSNSDDLPNAAQNNKDELINFINSSLTSSEGKGTSFKEPELKTNFQYPYTDVTVTKSGHIKIADNTNGQEQLIESHRNGSYNAKHASGDVVNKTTNNLIDIVLNDHNMFVKRHYRYRSHGSYSMRLDGTNYMQSNRQEIESANILFKTNLFEVNGNTNVYGNLIVSSSITVPLLKVKKIICDDIEVSNIMLGTAAFANQAGIAGGLGGVSPVKGSKPDVNIPSPIALEQGEKTNEASNRSQEPVTRNWKKVLDKLGPLKSLVVYCLGKRD
Physico‐chemical
properties
protein length:360 AA
molecular weight: 39610,09060 Da
isoelectric point:6,46625
aromaticity:0,07500
hydropathy:-0,40583

Domains

Domains [InterPro]
G3DSA:2.40.50.260
ATT
3–115
G3DSA:2.40.50.260
SSF69255
ATT
6–99
SSF69255
IPR009590
ATT
38–101
IPR009590
YP_009854112.1
1 360
Architecture
ATT
ATT 3-115 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009854112.1
1 360
Domain Start End Length (AA) Confidence
N-terminal 1 157 157 0,2897
Central domain 158 349 193 0,0474
C-terminal 350 360 10 0,9762
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-157
Central
158-349
C-terminal
350-360

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VchM_Kuja
[NCBI] 		2686437 Uroviricota > Caudoviricetes > Pantevenvirales > Kujavirus > Kujavirus kuja
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009854112.1 [NCBI]
Genbank nucleotide accession
NC_048827 [NCBI]
CDS location
range 48040 -> 49122
strand +
CDS
ATGAATATCTGTTCTGATTTGAAATGGTTTTTTGGTATAGTTGAGGAACATAAAAAGCCCACTCTTGCAAAAGTAAGAATTTTTGGTGTGCATAACATTGATCCTAATTTACTCCCAACAGAAAACCTACCAGAAGCATCAATAATGAAAGGGACTAACAGTTCAAACATTAATGGTCTTGGTGAAAGTACAACAGGATTATGGGAAGGAAGTTTTATATTTGGTTTTAGTATTGATGAAGCTTACACAAACATCTACATTGTGGGTACATTATCAAACAGTGACGATCTACCAAACGCGGCACAAAACAATAAAGATGAATTGATCAACTTCATAAATTCCAGTCTAACAAGCTCTGAAGGTAAGGGTACGTCATTTAAAGAACCAGAACTTAAAACTAATTTTCAATACCCATACACGGATGTCACTGTCACAAAATCAGGTCATATAAAAATAGCTGATAACACTAATGGTCAGGAACAACTAATAGAATCGCACCGGAACGGGTCTTACAACGCTAAACATGCGTCAGGTGATGTAGTAAACAAAACAACCAACAACCTTATAGACATCGTTCTAAACGACCACAATATGTTTGTGAAAAGACATTATAGATATAGGTCGCATGGTTCTTATAGTATGAGATTGGATGGAACAAATTACATGCAATCAAACAGACAAGAAATTGAATCAGCAAATATTCTTTTTAAAACAAATCTTTTTGAAGTAAACGGCAACACAAATGTCTACGGAAATCTAATTGTTTCATCATCAATAACAGTTCCATTATTGAAAGTGAAAAAAATTATTTGTGATGATATTGAAGTTTCAAACATTATGTTAGGCACTGCTGCTTTTGCTAATCAAGCTGGTATAGCTGGAGGGTTAGGTGGTGTTTCACCTGTAAAAGGTTCAAAACCTGACGTAAACATACCTTCACCTATTGCATTAGAACAAGGTGAAAAGACAAATGAAGCATCAAACAGATCTCAAGAACCAGTTACTAGAAACTGGAAGAAAGTTTTAGATAAACTAGGTCCACTAAAATCATTAGTGGTTTATTGTTTAGGTAAGAGGGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
396a3d7ef2dba6af16d3c37128718452b92911ae4ab7f8e19856fee60da5640d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6554
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a novel member of the family Ackermannviridae Maina,A.N., Mwaura,F.B. and Jumba,M. 2002-12 — GenBank