Protein

View in Explore
Genbank accession
XSF77788.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MIQKVISGSKGGSPKPHKPQEMEDNLISINKIKILLAISDGEIDDKFDLRQLMFNSVPVQNEDGSFNFEGVTAEFRSGTQTQEYIKGMEDSSSEVTVNREITTNNPYSISVTNKTLSAIRIKMFMPRGVRIESNGDKNGVRVEYEVQQAVDGGSFETVLTDVIEGKTMSGYDRSRRVNLPSFNNQVIFRVVRKTPDSSDSNVVDAIQVKSYAEVIDAKFRYPLTGLLFVEFDSKMFPNQLPTISIRKRWKIINVPSNYDPESRTYNGNWDGTFKKAWTNNPAWVLYDLMINQRYGLDQKELGISVDKWALYEAAQYCDQMVPDGKGGTEPRYLCDVIIQSQTDAYKVIRDICSIFRGMSFWNGESISVIIDRPREPAYIFTNDNVVNGDFSYTFASEKSMYTTCNVMFDDEQNMYQQDVEPVFDREATLRFGNNVTSITAIGCTRRSEANRRGRWILKTNLRSTTVNFATGLEGMIPTIGDVVAIADNFWSSNLTMNLSGRLLEVSGSQIFLPFRVDARAGDFIIVNKPDGKPVKRTISSVSEDGKTIEINIGFGFPVKPNTVFAIDRTDLALQQYVVTKIDKGDDDEEFTYKITAVEYDPNKYDEIDYGVNIDDRPTSIVEPDQIPKPENVQVSSESRIVQGMSVETMIVSWDKVPYAVFYDVQWRKDNGNWQNVPQTANKEVYVEGIYAGNYQVRVRSVAGSGTTSGWSNIVAATLTGKQGEPGRPINLTATDDVVFGIRTKWGFSEGSGDTAYTELQQSPDGTADNASLLSLIPYPQHEYYHSPMPGGNIVWYRVRTVDRIGNVSQWTDFVRGMASTNVDDIIGEISVDIENSPGYEWLVDNATDNAAQNAANAEAAIENALANDKDAIYMKKENGKRKAEYTKSLKLIADETQARVTAVEQLKASFDDQISASNSELREVIATETEAISREIDQLKAQIGDDIQASLTEIREAVANETEARTKADLTLSAKIGENEAALSQKLDSWSNASSTGAMYGVKLGLKYNGQEYSAGMAMSLIGSGAAVKAQILFEASRFAIMTGMNGKTQYPFVVENGQVILSSAIIKNGFITNAMIGEFIQSNNFQSGKEGWRITKSGGSEFNNVVVRGELYAAEGRFAFNGTGNTVQINNNGITVNLPGGGKVVVGRW
Physico‐chemical
properties
protein length:1150 AA
molecular weight: 127557,26910 Da
isoelectric point:4,89221
aromaticity:0,09130
hydropathy:-0,39704

Domains

Domains [InterPro]
DC_0014
STR
1–1150
DC_0014
IPR053171
Unmapped
3–862
IPR053171 IPR015406
IPR055385
ATT
92–217
IPR055385 IPR032876 IPR036116 Coil
IPR013783
STR
627–720
IPR013783
IPR003961
STR
628–722
IPR003961
XSF77788.1
1 1150
Architecture
STR
ATT
STR
ATT
STR
STR 1-91 | ATT 92-217 | STR 218-339 | ATT 340-488 | STR 489-1150
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XSF77788.1
1 1150
Domain Start End Length (AA) Confidence
N-terminal 1 505 505 0,8836
Central domain 506 1083 579 0,0602
C-terminal 1084 1150 66 0,7408
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-505
Central
506-1083
C-terminal
1084-1150

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage XJA18-XJ-2024
[NCBI] 		3419000 No lineage information
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XSF77788.1 [NCBI]
Genbank nucleotide accession
PV584117.1 [NCBI]
CDS location
range 7413 -> 10865
strand -
CDS
ATGATTCAAAAAGTGATAAGCGGATCGAAAGGTGGTTCACCAAAACCTCACAAACCTCAAGAAATGGAAGATAACCTGATCTCAATCAACAAGATTAAGATCCTGTTAGCAATATCTGATGGTGAGATTGACGATAAATTCGACCTTAGGCAGTTGATGTTCAATTCTGTACCAGTGCAGAACGAGGACGGATCATTCAACTTTGAAGGAGTAACCGCAGAGTTCAGATCTGGGACTCAGACTCAGGAATACATAAAAGGAATGGAAGATAGCTCAAGCGAGGTAACTGTAAACCGTGAGATTACTACAAATAATCCTTACTCAATATCAGTAACCAATAAAACTCTATCGGCAATACGTATAAAAATGTTTATGCCACGCGGAGTGCGAATTGAAAGCAATGGTGATAAAAACGGAGTTCGCGTTGAGTACGAAGTGCAGCAAGCGGTTGATGGTGGCTCGTTTGAGACTGTTCTCACTGACGTGATCGAAGGCAAAACAATGTCAGGTTACGACAGAAGCCGACGCGTAAACCTGCCGAGCTTCAATAATCAGGTTATATTCAGAGTGGTTCGAAAAACTCCAGACTCTAGTGATTCGAACGTTGTCGATGCAATTCAGGTGAAAAGCTACGCTGAGGTTATCGATGCCAAGTTTCGCTATCCTCTGACTGGTCTTCTTTTCGTCGAGTTTGATTCGAAAATGTTCCCAAATCAACTACCTACGATCTCAATTCGTAAGCGCTGGAAGATTATTAACGTTCCATCGAATTACGACCCTGAATCGAGAACCTATAACGGCAATTGGGATGGAACTTTCAAGAAGGCGTGGACTAATAATCCGGCGTGGGTTCTATACGACCTGATGATTAATCAGCGTTATGGACTGGATCAGAAAGAGCTTGGAATCTCCGTAGATAAATGGGCGCTATATGAGGCCGCGCAATATTGCGATCAGATGGTTCCAGATGGAAAGGGTGGGACTGAGCCTCGCTACCTTTGTGACGTGATAATTCAGTCACAAACTGATGCATACAAAGTGATTCGAGATATTTGCTCAATATTCCGAGGAATGAGTTTTTGGAATGGTGAAAGCATTTCTGTAATAATCGACAGGCCGCGTGAGCCTGCGTACATCTTCACCAATGACAACGTTGTTAATGGTGACTTCTCATACACGTTTGCAAGCGAGAAAAGCATGTACACGACGTGTAACGTGATGTTTGATGATGAACAAAACATGTATCAGCAGGACGTTGAGCCAGTATTCGATCGAGAGGCCACTCTACGGTTCGGTAACAATGTAACCAGCATTACAGCGATTGGATGCACCAGGCGCAGCGAGGCTAACCGACGCGGGAGATGGATTCTGAAAACTAACCTCCGTAGCACTACGGTAAACTTCGCTACCGGGCTTGAGGGCATGATCCCTACCATCGGTGATGTGGTGGCGATAGCTGATAACTTCTGGTCAAGTAACTTGACTATGAACCTATCAGGAAGATTACTCGAAGTATCTGGAAGCCAGATTTTCTTGCCGTTCCGAGTAGATGCGCGTGCAGGTGACTTTATTATCGTAAATAAGCCCGATGGCAAGCCCGTTAAGCGTACAATCTCAAGTGTTAGTGAAGACGGCAAGACCATAGAGATTAACATAGGCTTTGGCTTTCCTGTTAAGCCAAACACGGTATTCGCAATCGACCGCACCGACCTAGCGTTGCAGCAGTACGTCGTGACAAAAATCGACAAGGGTGATGACGATGAGGAATTTACCTACAAGATTACTGCGGTGGAGTATGATCCTAACAAGTACGATGAGATTGATTACGGAGTGAACATCGACGACCGACCAACGAGTATTGTTGAGCCAGATCAGATACCTAAACCGGAAAATGTGCAAGTGTCCTCAGAGTCGCGAATAGTCCAGGGGATGAGCGTAGAGACAATGATTGTTAGCTGGGATAAAGTGCCGTACGCAGTTTTCTATGACGTACAGTGGCGAAAAGATAATGGCAACTGGCAAAACGTACCTCAGACGGCAAACAAGGAGGTTTATGTTGAAGGGATTTACGCTGGTAACTATCAGGTTCGCGTGCGTTCAGTAGCTGGTTCAGGGACGACTTCTGGATGGTCAAATATAGTCGCAGCGACGCTGACAGGTAAGCAGGGTGAGCCGGGTCGACCGATTAACCTTACGGCTACGGATGACGTTGTTTTTGGTATCCGTACAAAATGGGGATTCTCTGAAGGTTCAGGCGATACGGCATACACAGAGTTGCAACAGTCTCCTGATGGAACGGCTGATAACGCAAGTTTGCTTTCTCTGATTCCGTACCCGCAGCATGAGTATTATCACTCACCGATGCCTGGAGGGAATATTGTGTGGTATCGGGTAAGGACGGTTGATAGGATCGGTAACGTGTCTCAGTGGACTGATTTTGTCAGAGGTATGGCATCAACAAACGTTGACGATATCATTGGAGAAATTTCTGTCGATATCGAAAACTCGCCTGGTTACGAGTGGCTTGTTGATAATGCAACCGACAACGCGGCGCAGAACGCAGCGAACGCAGAGGCAGCAATTGAGAACGCGCTCGCTAATGACAAAGACGCAATCTACATGAAGAAGGAGAACGGAAAGCGAAAAGCTGAGTACACCAAATCTCTTAAGCTGATTGCTGATGAGACGCAAGCTAGAGTGACAGCAGTAGAGCAATTGAAGGCTAGTTTTGACGATCAGATTAGTGCTAGCAATAGCGAGTTGCGTGAGGTTATAGCAACTGAGACTGAGGCGATATCTCGTGAGATTGATCAGCTTAAGGCTCAGATTGGTGACGATATTCAGGCAAGTTTGACTGAAATCCGCGAGGCTGTCGCAAATGAAACCGAGGCAAGAACGAAAGCTGACTTGACGTTGAGCGCAAAGATCGGAGAGAACGAGGCGGCACTTTCTCAAAAATTGGATTCGTGGAGTAACGCTAGCTCAACTGGTGCGATGTACGGAGTTAAGCTGGGGCTGAAATACAACGGTCAGGAATACAGTGCTGGTATGGCTATGTCTCTGATTGGTTCAGGAGCGGCAGTAAAAGCGCAAATTCTTTTTGAAGCGTCAAGATTTGCAATCATGACAGGGATGAACGGAAAGACACAATACCCGTTTGTTGTTGAGAATGGTCAGGTTATTTTAAGCAGCGCGATCATTAAAAACGGATTCATCACCAACGCAATGATCGGTGAGTTTATCCAGTCGAATAACTTCCAGTCCGGGAAGGAAGGGTGGAGAATCACGAAGAGCGGTGGCTCAGAATTTAATAACGTAGTGGTTAGGGGTGAACTTTACGCAGCAGAAGGTAGGTTTGCATTCAACGGAACGGGTAATACCGTTCAGATTAACAATAATGGCATCACAGTAAACTTACCCGGTGGCGGGAAGGTTGTAGTTGGGAGGTGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0bdb050bfc5c4f1156c9efb14b0270b283de4317733a4b03b096eb48c363e7d1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7732
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50