Protein

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Genbank accession
QGZ18299.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MAFLGNRPAENYISYDVQHFTTSATTSYTLDHAVANENELRLVINNVVQQPGGSYAYSASGTSLTLTSATSATDTMYCVYLGKATSTVNPPSGSVGSSQISADLITGQTALGATPADTDELLISDAGTLKRVDFSYLKSTNTPSFRATMSADQDGNSSEANTKVAFNTETYDEGSCYDHSSNYRFTVPSGEGGKYLIIAHTHTRTPSNAYSGKACRLYKNGSFLTESQTATAGDNLHTSRTNNEEVTTIEDLSAGDYIEVYVKVFGSSYNIESEGSYFSACKLII
Physico‐chemical
properties
protein length:285 AA
molecular weight: 30503,87250 Da
isoelectric point:4,76682
aromaticity:0,09474
hydropathy:-0,36702

Domains

Domains [InterPro]
DC_1764
ATT
67–160
DC_1764
DC_2277
RBD
135–283
DC_2277
IPR008983
RBD
136–284
IPR008983
IPR008983
RBD
143–283
IPR008983
QGZ18299.1
1 285
Architecture
ATT
RBD
ATT 67-160 | RBD 161-284 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ18299.1
1 285
Domain Start End Length (AA) Confidence
N-terminal 1 97 97 0,9380
Central domain 98 274 178 0,0096
C-terminal 275 285 10 0,9961
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-97
Central
98-274
C-terminal
275-285

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC115P
[NCBI] 		2686463 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidatus Pelagibacter sp. HTCC7211
[NCBI] 		439493 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ18299.1 [NCBI]
Genbank nucleotide accession
MN698247 [NCBI]
CDS location
range 39053 -> 39910
strand -
CDS
GTGGCTTTTTTAGGAAATAGACCTGCAGAAAACTATATTAGTTATGATGTACAACACTTTACAACAAGTGCTACAACAAGCTATACATTAGACCATGCTGTTGCTAACGAAAACGAACTTCGTTTGGTAATTAACAATGTGGTTCAACAACCGGGAGGTAGCTATGCATATAGTGCTTCGGGTACTAGTTTGACTTTAACTTCTGCAACTTCTGCAACAGATACAATGTATTGTGTATATCTTGGAAAAGCTACAAGTACAGTAAATCCTCCAAGTGGTTCTGTTGGAAGTTCTCAAATTTCTGCTGATTTAATTACTGGTCAAACTGCTTTAGGTGCAACACCTGCAGATACAGATGAACTTTTAATTTCTGATGCCGGAACTTTAAAGAGAGTAGATTTTAGTTATTTAAAATCTACTAACACTCCATCTTTTAGAGCCACAATGTCAGCAGACCAAGATGGCAATTCATCTGAAGCTAATACAAAAGTTGCTTTTAATACAGAAACTTATGATGAAGGTTCTTGTTATGACCATAGTTCAAACTATAGATTTACAGTTCCTAGTGGTGAAGGTGGAAAATATTTAATAATTGCACACACTCATACAAGAACACCTAGTAATGCTTATTCTGGAAAAGCATGTAGACTTTATAAAAATGGTTCTTTTTTAACTGAAAGTCAAACAGCTACAGCAGGAGATAATTTACATACTTCAAGAACAAATAATGAAGAAGTAACAACAATAGAAGATTTATCCGCAGGAGATTATATAGAAGTTTATGTAAAAGTTTTTGGTTCATCTTATAACATAGAATCTGAAGGTTCTTATTTTTCAGCATGTAAATTAATTATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
adb7143a5740c7eb5375cba624ec908f05c529f3216f0bee91ebde4f62c43f95
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8490
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank