Protein

View in Explore
Genbank accession
YP_008129863.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MAQAYFSLVTTTGKIKIAQSAAGGDAVTITHFAIGDGNGAETNPTAASTALVREVWRTQVESVITDPDNPSAILVTAIIPTNAGGWWMREFGIFDQAGSMIAVAKPVSQYKPTALEGQLEDIRYEFQIIIGENANVTLLVDPSLLFATRAWVENRKIPMGQLMRLPWLPVLSMTLSNAPGNPAVGDSYLVPSNATGIWLANIGKIAEWNGTNWNYVLPPDGHGISLPDGRIFERIGGTYVEKLALDVQSGKWSYAISGGTANALTATLSPAPAALAAGMHLTVLVSTANTAAATLNVNGLGAVPIATATGATLSAGDLPAGMPVDLVYSGTSWVLSPTVLMRGKMDVFSAAGTFTWVCPAGVYRVKATVTGAGGGGSRASANQPGSSGGAGGTAIGYVSVVPGTSYTIIVGTGGVAGNYGSGGTVEGKPGSSSAALGLTGNAGSGATLLTNGTGGNASGGALNLRGGDGQDAVSNSTGFSANGGSSFWGGGLSSGTSDGAKGVTPGTGGCSAYGGFDIAGGAGADGIVVLEY
Physico‐chemical
properties
protein length:532 AA
molecular weight: 53104,96010 Da
isoelectric point:4,97440
aromaticity:0,07143
hydropathy:0,18102

Domains

Domains [InterPro]
IPR022225
ATT
1–149
IPR022225 IPR021251 DC_2087
DC_1371
STR
1–339
DC_1371 IPR049304
IPR051934
Unmapped
2–154
IPR051934
YP_008129863.1
1 532
Architecture
ATT
STR
RBD
STR
ATT 1-149 | STR 150-339 | RBD 340-349 | STR 350-532
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RR1-B
[NCBI] 		929834 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Agrobacterium tumefaciens
[NCBI] 		358 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008129863.1 [NCBI]
Genbank nucleotide accession
NC_021557.1 [NCBI]
CDS location
range 33352 -> 34950
strand +
CDS
ATGGCGCAGGCTTATTTTTCGCTCGTCACCACCACCGGCAAGATCAAGATCGCGCAGAGTGCGGCCGGTGGCGATGCAGTTACTATCACACATTTTGCAATTGGTGACGGCAATGGCGCTGAAACCAATCCGACCGCCGCCAGCACGGCGCTGGTGCGCGAAGTCTGGCGCACGCAGGTCGAAAGCGTCATCACCGATCCGGACAATCCTTCCGCCATTCTGGTCACGGCGATCATCCCGACCAATGCCGGTGGCTGGTGGATGCGCGAGTTCGGTATTTTCGATCAGGCCGGATCGATGATCGCCGTTGCTAAACCCGTCAGCCAGTACAAGCCGACCGCGCTCGAAGGCCAGCTTGAAGACATCCGTTACGAGTTCCAGATCATCATTGGCGAAAACGCCAATGTAACCTTGCTGGTCGATCCGTCCCTGTTGTTTGCCACGCGGGCTTGGGTCGAAAACCGCAAAATTCCGATGGGCCAGCTTATGCGCTTGCCGTGGCTGCCTGTTCTTTCCATGACGCTCTCAAACGCTCCTGGAAATCCGGCCGTGGGCGACAGCTATCTCGTTCCTTCTAACGCCACCGGCATCTGGCTCGCAAATATCGGCAAAATTGCCGAATGGAACGGCACGAACTGGAACTACGTTTTGCCTCCCGATGGCCATGGCATCAGCTTACCAGACGGCCGCATATTCGAGCGAATAGGTGGCACCTATGTCGAGAAGTTGGCGCTCGATGTACAGTCTGGTAAGTGGAGCTACGCCATTTCCGGTGGCACGGCCAATGCCTTGACGGCTACGCTTTCGCCAGCTCCCGCCGCTCTGGCGGCTGGCATGCATCTCACCGTTTTGGTTTCCACGGCCAACACCGCGGCAGCGACATTGAATGTGAATGGCCTTGGTGCTGTCCCCATAGCGACCGCGACAGGGGCTACACTTTCTGCTGGTGATCTTCCAGCTGGTATGCCCGTCGATCTCGTCTATTCCGGTACATCATGGGTTCTCTCCCCAACCGTATTGATGCGCGGTAAAATGGATGTGTTCAGCGCTGCGGGCACTTTCACATGGGTATGCCCTGCGGGTGTGTATCGCGTCAAGGCGACAGTTACGGGCGCTGGCGGCGGAGGATCACGTGCTTCAGCCAACCAGCCTGGTTCATCAGGGGGAGCGGGAGGCACGGCAATTGGTTACGTCTCTGTTGTCCCTGGAACATCTTACACGATTATCGTGGGAACCGGAGGAGTGGCAGGCAACTACGGGTCGGGTGGAACCGTCGAGGGTAAGCCCGGATCTTCTTCCGCTGCATTGGGACTGACTGGCAACGCCGGGTCAGGGGCTACACTTCTTACAAATGGTACTGGCGGCAATGCTTCTGGTGGAGCACTCAACCTTCGCGGCGGTGATGGTCAGGACGCTGTCTCTAATTCCACCGGATTTTCCGCCAACGGCGGATCGTCATTTTGGGGCGGAGGCCTGTCTTCCGGAACAAGTGACGGCGCCAAAGGCGTCACGCCCGGAACTGGCGGGTGTTCAGCGTACGGCGGCTTTGACATCGCTGGCGGCGCGGGAGCTGATGGCATCGTGGTTCTGGAGTATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
61f1111db34fe36cdfbbde0f58ad146e764ec22a4b3d0196ba8468233ae12f6a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8681
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Rhizobium phage RR1-B Henn,M.R., Engelen,B., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank