Protein

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Genbank accession
YP_010770129.1 [GenBank]
Protein name
maturation protein
RBP type
TSP
Evidence RBPdetect
Probability 0,62
Protein sequence
MTTKIKAVPFARERKRSSITTVSSHFSDVVTRISTGEQTVYGNSTQTINLQNWEIMDDWVTPGFAAKQARGEIVASPMSSVKTSYEVGGTGSMAHYVNGDWMEDYGRSDAALVALYGMPSLSPNTVDIESLVSYCKTNALSKCRSSSLQGLVSLAEMGKTINMLKHPLDSISSLLAFIHQQRTAKKNLRVEKRNGEVRFINGRPVPTSQRRRYTGPGRVVRKSKETLIIPISETISSSVLVNNLGLRPLLMDIDAVLNQIPNAHKEERLTFRSTAEDKSVNVENNVLGVGGFSVNAMTTTTHVVKVRSSVMILDQFNVSQDFGISLYDLPEAAWELVPYSFVLDYVVNVGDFLGALRALATQNILTASTVYTVDSIASREVTSATPSPNWTIVTMPSGKDVVTINTKVRSIGTGIPSGMVVLPSAKMVTPTHIQNTLSLIVQQLIGIRNGPPTLAKNMR
Physico‐chemical
properties
protein length:459 AA
molecular weight: 50082,81450 Da
isoelectric point:9,48016
aromaticity:0,05882
hydropathy:-0,08802

Domains

Domains [InterPro]
IPR005563
STR
237–444
IPR005563
YP_010770129.1
1 459
Architecture
STR
STR 237-444 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010770129.1
1 459
Domain Start End Length (AA) Confidence
N-terminal 1 435 435 0,2073
Central domain 436 448 14 0,0015
C-terminal 449 459 10 0,9946
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-435
Central
436-448
C-terminal
449-459

Taxonomy

  Name Taxonomy ID Lineage
Phage ssRNA phage SRR6960509_13
[NCBI] 		2786524 Viruses > Riboviria > Orthornavirae > Lenarviricota > Leviviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010770129.1 [NCBI]
Genbank nucleotide accession
NC_074172 [NCBI]
CDS location
range 234 -> 1613
strand +
CDS
ATGACAACTAAGATCAAGGCTGTACCGTTCGCTAGAGAGCGGAAACGCTCTTCAATTACGACGGTGTCTAGCCACTTTTCTGATGTTGTTACTCGTATAAGTACCGGTGAGCAGACTGTCTATGGAAATTCTACACAGACAATTAATCTGCAAAACTGGGAAATCATGGACGATTGGGTCACACCTGGGTTCGCTGCGAAGCAAGCCCGCGGAGAAATTGTTGCATCTCCGATGTCTAGTGTGAAGACCTCTTACGAGGTCGGTGGCACGGGGTCTATGGCTCATTACGTCAATGGTGACTGGATGGAAGATTATGGACGTTCCGATGCGGCGCTTGTTGCGCTGTACGGGATGCCTTCTCTCTCACCGAATACCGTCGATATAGAGTCACTTGTATCCTATTGCAAGACAAATGCGTTGTCCAAATGCAGGAGTTCATCCCTGCAAGGGCTAGTCAGCTTGGCTGAGATGGGTAAAACCATTAATATGCTTAAGCACCCTCTCGACTCAATTTCGAGTTTGTTGGCTTTTATTCACCAACAGAGGACGGCTAAGAAAAACCTGCGCGTTGAAAAACGTAACGGCGAAGTTCGGTTCATAAATGGTAGACCTGTCCCAACTAGTCAACGCCGGCGCTATACTGGGCCTGGCAGAGTCGTGCGCAAGAGTAAAGAAACGCTGATCATTCCGATCAGTGAGACTATCTCTTCGTCCGTCCTTGTCAATAACCTGGGTCTGCGTCCGTTGCTAATGGATATCGATGCTGTTTTGAATCAGATTCCTAACGCACACAAAGAAGAGCGCCTAACCTTCCGCTCAACAGCAGAAGATAAATCCGTAAACGTGGAAAATAACGTTTTAGGAGTTGGCGGATTCTCAGTGAACGCGATGACGACGACCACTCACGTGGTTAAAGTCCGTTCTTCCGTGATGATACTCGATCAGTTTAACGTTTCCCAGGACTTTGGCATCAGTCTTTATGACTTGCCCGAAGCTGCTTGGGAGCTGGTCCCGTACTCGTTTGTCCTCGACTATGTTGTCAACGTAGGCGATTTCCTCGGAGCACTAAGGGCACTCGCAACTCAGAATATTCTGACTGCGTCCACTGTGTACACTGTCGATTCGATAGCGTCACGTGAGGTCACTTCGGCAACGCCGAGTCCGAATTGGACTATAGTGACTATGCCTTCCGGGAAAGATGTCGTGACCATAAATACGAAAGTAAGGTCAATCGGCACCGGCATCCCATCTGGTATGGTTGTTCTCCCATCTGCGAAGATGGTGACCCCAACTCATATTCAGAACACCCTTTCGTTAATCGTTCAACAGCTCATAGGGATCCGAAATGGACCACCCACGCTCGCGAAAAACATGAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
80bb68f1b07c21ec3abdc2c4d2b37e4003953982543d2c70c1e29075d6623140
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6000
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Leviviricetes taxonomy Stockdale,S.R., Callanan,J., Adriaenssens,E.M., Kuhn,J.H., Rumnieks,J., Shkoporov,A., Draper,L.A., Ross,P. and Hill,C. 2021-11-30 — GenBank