Protein

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Genbank accession
YP_009833817.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,91
Protein sequence
MSNYSQQSKVLLVSVINQDKGTFISPNDVYFIGPTANDHPDYDTKVTMVALEDSPYRDSKVIEYNKVEFSGIFSVPLIFTAAGNILTTSDLIKRINEEYGTQLDDTDIIVEPVTPVLLSSTVAMVTVRAAPNALIIKGQLTVYFSDTASIRKWIRNVSTEYSSDGKTLRISGSNRRVDKKVVIGNAIDYLPATSAMALSLGADGKFNEVMTLPTQSPVKVRFREGSLLEVVGPSDETSYDRNGKLLRISPQLPPIFETIGNLAQIKATFDDNGPDFNPNYSIKVKRARSGVVYYVDSVNGNDLNGQGTEQSPYKSFNAAITRTPLARTIVIKDGSSFKSGEGPSAPIEDRSLDIVTSGTNKVTLSGACKVSAWTKSPGQDNVYVATLTDKVGGVADYIAAGTSGRATQLTAVASIAAAATTKGSYYPEEGKVYVHTLDDRAPDNKLVVISANPVISVKGNSQVYLENLIIVDSINGVVVEATSVDKVPNFYAVNCEFKNSAGRGLSGYGSTVQTEGCKFTANASNATYYDLDRQSPGLGIKSRFSESSNTFEWNGTVDPFTGSTTLAIAGTVGTRCKNVYSNCFGRPILDYGTNTATANYSLTVGQSTINDVLNGALITSGHPDTSRYGRAMTLVFSSKLTQRDGAFTLASIGNGNIYLYDTPVGKMGQYGLSDPYKFIYTSSQRAQQ
Physico‐chemical
properties
protein length:688 AA
molecular weight: 73960,98870 Da
isoelectric point:6,11362
aromaticity:0,08576
hydropathy:-0,21294

Domains

Domains [InterPro]
IPR057701
STR
1–146
IPR057701 IPR011050
DC_1231
ATT
137–340
DC_1231
G3DSA:3.30.1910.20
RBD
291–344
G3DSA:3.30.1910.20
DC_1219
STR
320–670
DC_1219
YP_009833817.1
1 688
Architecture
STR
ATT
STR
STR 1-136 | ATT 137-340 | STR 341-670 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009833817.1
1 688
Domain Start End Length (AA) Confidence
N-terminal 1 312 312 0,9856
Central domain 313 677 366 0,9936
C-terminal 678 688 10 0,3856
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-312
Central
313-677
C-terminal
678-688

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage vB_SmaM_ 2050HW
[NCBI] 		2024252 Uroviricota > Caudoviricetes > Chimalliviridae > Moabitevirus mv2050HW >
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009833817.1 [NCBI]
Genbank nucleotide accession
NC_048668.1 [NCBI]
CDS location
range 134240 -> 136306
strand +
CDS
ATGAGTAATTACTCCCAACAAAGTAAGGTTCTGTTAGTTAGCGTAATTAACCAGGACAAAGGTACGTTCATTTCTCCTAATGACGTATACTTCATCGGACCAACCGCTAACGATCACCCCGACTACGATACGAAAGTCACCATGGTCGCCTTGGAGGATTCACCTTATCGTGACTCCAAGGTTATCGAGTACAACAAAGTAGAGTTCTCGGGTATCTTCTCCGTACCGCTCATCTTTACTGCCGCAGGTAATATCCTGACTACGTCTGACTTGATCAAACGTATCAACGAAGAATACGGTACTCAGTTAGATGATACCGACATCATCGTTGAACCAGTAACACCAGTGTTGCTGAGCAGTACTGTGGCAATGGTGACGGTTCGTGCTGCGCCTAACGCACTGATCATCAAAGGTCAGTTGACGGTTTACTTCTCTGACACCGCATCCATTCGTAAGTGGATTCGTAACGTAAGTACGGAGTATTCCAGTGACGGTAAAACTCTGCGTATCTCTGGCTCTAACCGCCGCGTAGATAAAAAGGTTGTCATCGGTAATGCTATCGATTATCTCCCGGCTACGAGCGCCATGGCGCTTTCTCTGGGGGCTGACGGTAAGTTCAACGAAGTAATGACTTTACCTACTCAGAGTCCGGTGAAGGTTCGCTTCCGTGAAGGTTCCCTGTTAGAAGTTGTGGGTCCGAGCGATGAGACTAGCTACGACCGTAATGGTAAGTTGCTTCGTATCTCTCCTCAGCTGCCACCGATCTTCGAAACTATCGGGAACCTGGCACAGATCAAAGCAACGTTCGACGATAACGGCCCAGACTTCAATCCGAACTATTCGATTAAAGTTAAACGGGCACGTTCTGGTGTTGTCTACTACGTTGACTCTGTAAATGGCAATGACCTGAACGGTCAGGGTACCGAACAGTCCCCGTACAAGAGCTTCAACGCAGCGATCACTCGTACTCCGCTGGCACGGACTATCGTCATCAAAGACGGTTCTTCGTTCAAGAGCGGAGAAGGCCCAAGTGCGCCAATCGAAGACCGTTCACTCGATATCGTTACTTCCGGTACGAACAAGGTCACCCTGAGTGGTGCATGTAAGGTAAGCGCGTGGACTAAGTCGCCAGGTCAAGACAACGTCTACGTTGCAACCCTGACTGATAAAGTGGGCGGTGTTGCTGACTACATCGCAGCCGGTACGTCTGGTCGAGCTACTCAGTTGACTGCCGTAGCATCTATTGCTGCTGCAGCTACAACCAAAGGTAGTTACTACCCCGAAGAAGGAAAGGTCTACGTCCATACGCTGGATGATCGTGCACCGGATAATAAGTTGGTTGTTATCTCAGCCAACCCAGTAATCAGTGTAAAAGGTAACTCACAGGTTTACCTGGAGAACCTGATCATCGTCGATAGCATCAACGGTGTTGTAGTTGAAGCGACCAGTGTTGACAAAGTTCCTAACTTCTACGCAGTGAACTGCGAGTTTAAAAACTCAGCGGGCCGCGGTTTAAGTGGTTACGGTTCGACTGTTCAGACTGAAGGTTGTAAGTTCACGGCTAACGCCAGTAACGCAACCTACTACGATCTGGATCGTCAGTCTCCTGGTCTGGGTATCAAGTCCCGCTTCAGTGAGTCGAGTAACACCTTTGAGTGGAACGGTACTGTCGATCCATTCACGGGCTCAACAACACTTGCTATTGCCGGTACAGTCGGTACACGTTGTAAGAACGTCTACTCCAACTGCTTCGGTCGCCCTATCCTGGATTACGGTACAAATACCGCAACAGCCAACTACTCGTTGACTGTGGGTCAAAGTACGATTAACGATGTATTGAACGGTGCGCTGATTACTTCAGGTCACCCAGATACAAGTCGTTACGGTCGTGCGATGACGTTGGTGTTCTCGTCTAAACTGACTCAGCGCGATGGTGCATTTACCTTAGCGTCAATCGGTAACGGTAACATCTACCTGTACGATACCCCGGTAGGTAAGATGGGCCAGTATGGATTGAGCGATCCGTACAAGTTCATCTACACCTCGAGCCAACGAGCTCAACAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6db406e8a3033a79373a73ec539d62bac43faf54f8843d448562c508a2130679
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6886
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50