Protein

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Genbank accession
AGO49328.1 [GenBank]
Protein name
pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,86
Protein sequence
MMKTILLLAFSLCSFFAVAQTQDVTIAVPTPDQIIDTINNRPEGKKISASAIEGTFEDSVLSAEAQASLARANESITSELTNEPKGSIKSDNAVSISYLEYLIAVNSQKNKSNTIYNVSSEEDVLNQDLVNSTFIDLATPYDYISETHMIRDDIHDYDVRGGFSHDVTSESVAFPVSLAKTNPTNVSRSGYNATTWEAAFVVKGDFAIRVAGNDDSMSRQRVLINGKPYQFINDTGLEDGGTRRWAVFQMRKGKEYEIRIQFSQAGSFYGFKTEVGGFIKALDPDETILFFGDSITASTGATKGVYGYALSVFAGKNANVLLSGIGGTGYVNTVGGTQYNLPERIVQNYTDLVAESGVPDKVVIAMGINDLSLSGIEVAANSAFDLLRTVYSGEVYVLNAFNANAPTKSTAYQSFESNLLAAVDGRDGFTFIDVSELSYTKFDAVHPDDAGHATIAKFLYPYLVDESKYIKKIPASAIEDESLTELKLSESLVDRLNEVNSTISEDIKNLHSSSDPAGGNESNIINAWVPATSATIESNNLDSYLGSLSIKATKTNSGSAVIYSPNYTVEVGKTYIFKCRVKVGGGFVSGSNMYLSDKTGAFLQSFINEADLGWQELTQTLSFSKTRTRVNISLSAQPANATLLIDAVELYEVGEGIKAFPEAYGFGSVSTGGRGGSVRKVTNLNNSGLGSLRAACELDNSIVIFETAGTIDLDSPISVGNNVSIYGQTAFRNGGQGITLKASNTNESSLMVFSGKDNLIVQYIRFRRGVTPFVTSATAGQNLALANAATKIMIDHCSFGWDEDESLTIWDASEVTVQNSIVTNSLMVNDYGRQKTSKSLIVGNSADKVSIYKTLIGNADQRNALFGGSTSPIEQFEFKNNLIFNWGSIGTDFAGSQLPFKVNIIGNKWKAGHNSNISRHGLRATGNTGDLFYLEGNITISRPTNDLDEWLAIGDSATPSSTLATTFQQNTPFDYPLQYAPTYGIEELESDVLKQMGVNLYVDYPDMLAKSHYTHGNGFIMNKPADIGGYPVLSGFKKAIQDSNNDGIPDDFAKVNGISSSNQIIPFYKFGTWQFDNSFKYTAIEVYAYYLSKN
Physico‐chemical
properties
protein length:1094 AA
molecular weight: 118607,71950 Da
isoelectric point:4,82440
aromaticity:0,10055
hydropathy:-0,18455

Domains

Domains [InterPro]
DC_1016
ATT
18–278
DC_1016 IPR036514 G3DSA:2.60.120.260 IPR012334
SSF52266
STR
282–464
SSF52266 IPR008979 IPR052063
cd00229
ENZ
288–462
cd00229 IPR011050
IPR013830
ENZ
290–453
IPR013830 DC_1265
AGO49328.1
1 1094
Architecture
ATT
STR
ATT 18-278 | STR 279-997 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGO49328.1
1 1094
Domain Start End Length (AA) Confidence
N-terminal 1 120 120 0,8598
Central domain 121 323 204 0,7900
C-terminal 324 1094 770 0,2838
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-120
Central
121-323
C-terminal
324-1094

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage phi3:1
[NCBI] 		756279 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cellulophaga baltica
[NCBI] 		76594 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGO49328.1 [NCBI]
Genbank nucleotide accession
KC821630 [NCBI]
CDS location
range 7154 -> 10438
strand +
CDS
ATGATGAAAACAATTTTATTACTGGCGTTTTCGCTTTGCAGCTTTTTTGCAGTAGCTCAGACTCAAGACGTGACAATAGCTGTTCCGACACCTGACCAGATTATTGACACGATAAACAATAGGCCTGAAGGAAAAAAAATCTCAGCTTCAGCTATTGAAGGAACTTTTGAAGATAGTGTTTTAAGCGCTGAAGCTCAAGCATCTTTAGCTAGAGCAAATGAATCTATAACCAGCGAATTAACTAACGAACCGAAAGGCTCAATTAAATCTGATAACGCTGTATCTATAAGCTACTTAGAGTATCTTATAGCTGTAAATTCGCAAAAAAATAAATCTAATACGATTTACAATGTTAGCAGTGAGGAAGATGTTTTAAATCAGGATTTAGTTAATTCAACTTTTATTGATTTAGCAACTCCTTACGACTACATATCAGAGACACACATGATAAGAGATGATATACATGACTACGATGTTCGTGGTGGTTTTTCTCACGATGTTACGAGCGAATCTGTAGCATTCCCCGTATCTTTAGCTAAGACAAATCCCACCAATGTATCTAGATCAGGATACAACGCGACAACGTGGGAAGCTGCTTTTGTTGTTAAAGGTGATTTCGCTATTAGAGTAGCTGGAAACGACGACAGTATGTCTAGGCAAAGAGTTTTGATAAATGGAAAGCCTTACCAGTTCATAAATGATACTGGATTAGAAGATGGAGGCACTAGAAGATGGGCTGTTTTCCAAATGAGAAAAGGAAAGGAATATGAAATTAGGATACAGTTTTCTCAAGCCGGTTCTTTTTATGGTTTTAAAACTGAAGTTGGTGGATTTATAAAAGCTCTTGACCCTGATGAGACTATTCTTTTCTTTGGTGATAGCATAACAGCTTCAACAGGAGCAACGAAGGGAGTTTATGGTTATGCTCTTAGTGTCTTTGCTGGTAAGAACGCGAATGTACTTCTTTCAGGTATAGGAGGAACTGGTTATGTTAATACAGTTGGAGGCACTCAATACAATTTACCTGAAAGGATTGTCCAGAATTACACTGATTTAGTGGCTGAGTCAGGGGTTCCTGATAAAGTTGTTATAGCGATGGGAATTAACGATTTAAGCTTGTCAGGCATAGAAGTCGCAGCGAATAGCGCTTTTGATTTGCTTAGAACTGTCTATAGTGGCGAAGTTTATGTGTTAAATGCTTTTAATGCTAACGCACCAACTAAATCAACAGCTTACCAGAGTTTCGAAAGCAATCTTTTAGCTGCTGTAGATGGAAGAGATGGGTTTACTTTTATAGATGTATCAGAGCTTTCCTATACAAAGTTTGACGCTGTTCATCCTGATGACGCTGGTCACGCTACTATAGCGAAATTTTTATACCCATATTTGGTTGATGAAAGTAAATACATCAAAAAGATACCAGCTTCAGCGATAGAGGATGAAAGCTTAACTGAATTAAAGCTTTCTGAATCCTTAGTAGATAGGTTGAATGAAGTGAACTCAACTATATCCGAAGACATAAAAAATTTACACAGTTCAAGCGACCCTGCAGGTGGTAATGAATCAAATATAATTAACGCATGGGTTCCAGCGACTTCAGCTACAATAGAGTCAAATAACCTAGATAGTTATTTAGGCAGCTTATCTATTAAAGCTACGAAAACAAATTCAGGGTCTGCTGTTATTTATTCACCTAATTACACAGTTGAAGTAGGTAAAACATATATTTTTAAATGTAGAGTTAAAGTAGGTGGTGGTTTTGTTTCAGGTAGTAATATGTATTTATCTGATAAAACAGGTGCTTTTTTGCAATCATTTATTAATGAAGCTGATTTAGGTTGGCAGGAACTAACGCAAACCTTAAGTTTTAGCAAAACTAGAACTAGAGTTAATATATCATTAAGTGCGCAGCCCGCGAATGCAACATTATTAATTGATGCTGTAGAATTATATGAGGTGGGTGAAGGAATTAAAGCTTTTCCTGAAGCTTATGGTTTTGGTTCTGTATCTACAGGAGGTAGAGGTGGTTCTGTTAGAAAAGTTACTAATCTAAATAATAGTGGGTTAGGTAGCTTGAGAGCAGCGTGTGAGCTTGATAATTCTATAGTAATATTTGAAACTGCAGGTACAATAGATTTAGATTCTCCTATAAGTGTAGGTAATAACGTTTCTATTTATGGTCAAACAGCTTTTAGAAACGGGGGTCAAGGAATAACGTTAAAAGCTTCAAATACTAATGAATCTAGTTTAATGGTTTTTAGTGGTAAAGATAATTTGATAGTTCAATACATAAGATTTAGAAGAGGAGTTACGCCTTTCGTTACATCTGCCACAGCTGGTCAGAATTTAGCTCTAGCCAATGCAGCTACTAAAATAATGATAGACCATTGCTCTTTTGGATGGGATGAAGACGAAAGCCTTACTATCTGGGATGCGTCCGAAGTTACTGTACAAAACTCTATTGTTACAAATTCTTTAATGGTTAATGATTACGGTAGACAAAAAACAAGTAAGAGTTTGATAGTGGGGAATAGTGCAGATAAAGTTTCTATATATAAAACACTTATAGGAAACGCTGATCAAAGGAACGCTTTATTTGGTGGTAGTACTTCTCCTATAGAACAATTTGAATTTAAGAATAATCTTATATTTAATTGGGGTTCTATTGGAACTGATTTTGCGGGTTCTCAATTACCTTTCAAGGTTAATATTATTGGGAATAAATGGAAAGCGGGTCATAACTCCAACATAAGTAGGCATGGACTTAGAGCTACTGGTAATACTGGTGATTTATTTTACCTAGAAGGCAATATAACTATATCACGCCCTACAAATGATTTAGATGAATGGTTAGCTATTGGTGATTCAGCGACTCCATCATCTACTTTAGCTACCACGTTTCAACAAAACACTCCATTTGACTACCCGCTACAATACGCACCTACTTATGGTATAGAAGAATTAGAAAGTGATGTATTGAAGCAAATGGGTGTAAATTTATACGTAGACTACCCTGATATGTTAGCGAAATCACATTATACTCACGGAAACGGGTTTATTATGAATAAACCCGCAGACATAGGTGGTTACCCTGTTTTATCAGGCTTCAAAAAAGCTATACAAGATTCTAATAATGATGGTATTCCTGATGATTTTGCTAAAGTTAATGGAATAAGTTCTAGTAATCAAATAATACCTTTTTATAAATTCGGAACTTGGCAATTTGACAACTCTTTTAAGTATACAGCGATAGAGGTTTATGCTTATTACTTAAGTAAAAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ddb6fc79922d9046be6121392e889c6166dc3d307eb8c5accc18be193be49879
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6675
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50