Protein

View in Explore

Genbank accession

AGO47169.1 [GenBank]

Protein name

SGNH hydrolase

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,74

Evidence RBPdetect2

Probability 0,77

Protein sequence

MAITIQIRRDTAANWTLNNPILAQGEQALELDTRKEKLGDGVTRWNDLDYRLIQEGAKGEDGEDGKSAFDIALENGFVGTEAEWLISLKGSDGLVGEKGEKGDVGEKGDVGEKGEKGDVGATGADGIQGEKGDIGPTGLTGAKGDIGLTGAQGEKGDQGDVGEKGEKGEKGDIGLTGAQGDQGIQGIQGEKGEKGDQGESVPQTIDDGSIVEAKLEDLVVNKINDAVSSKLDSEPTKTSKISNLVNVNEFNYQVALNRQELVEGTSYVQTEIEDDVLNIDVVNSTFVNLLEPYDYISESHMIRDSIFDYDARGGWEYRGSETTAIPVSWSKPTTTNVFGSGYNATVWGAAFTVKGDFAVRVAGSDDSMARQRIFINGKPYLFENKNGLPDGGTRRWAVFQMKKGKTYEIKVEFSQAGSFYGFKTEVGGFVEALKPKETVFFFGDSITASTGASKGGYGYSHMIFTGKNTNVLSSGIGGTGYVNNLSGTQYNLPERIVKNYNDVVAESGIPDKVVIAMGVNDLGLTGILDGMNNSFDLLRTVYDGEVFVLNSFNPSAPTISTAYQSFTDDLISAIGDREGFTFVDISELSYSKFDTVHPDDEGHATIAEFLYPYLVDESKYLDTKIITSEEIEDLPISKIAGLEDALIDVVKDKPVSVIKNLHKTSDPTSLINESNIINAWSKNNTSLTLSSDNTDSVRGALSLKASKTVAGSAVFYTPNYTVELGKEYIFTCKVKVGGGFITGSTMYSSEKSGAFVQTPIDHTITEWQTLTQTLSFSKERTRFTFSMSVQEVGAFLLVDDIEFYEVSDTIKAFPNAEGFGAISTGGRTGTVKFVTNLNDSGAGSLREACSTSFSYIVFLIAGTIELDSPIFVESNVSIYGQTAFRNGGQGITLRASSTNEASLMVFNSGNENLVIQYIRFRRGMTPFVTSATAGQTLALTGDASKIIVDHCSFGWDEDESLTIWGVLDVTVSNSTITNSLKVNQYGREKTSKSLIIGNGSDRVSIYTTLIGNADQRNALFGGSTLPIESFEFKNNLIFNWGNIGTDFLGGQLPLKVNIIGNKWKIGNNSILNRHGLRATGNTGDKFYLKGNINLNRPTDDLDEWLAIGDSATPSANLSTTFQELTPFDFPLENAKTYSIEELEGEVLNQMGASLYVDKPDRLSKRDYLDGTGSHINNQEDVGGFPTLSDLTSPIIDPLNIGIDEEFANAHGITSSNQIKLSYDFGTWIFDNSLGYEAIEVYAYWLTKN

Physico‐chemical properties

protein length:	1248 AA
molecular weight:	135132,28600 Da
isoelectric point:	4,56516
aromaticity:	0,09295
hydropathy:	-0,30232

Domains

Domains [InterPro]

DC_0435
ATT
1–62

DC_0435 DC_0723 DC_1016 IPR036514 DC_2200 G3DSA:2.60.120.260 IPR012334

SSF69349
STR
4–197

SSF69349 SSF52266 IPR008979 IPR052063

IPR041352
ATT
5–43

IPR041352 IPR008160 cd00229 IPR011050

IPR013830
ENZ
441–604

IPR013830

AGO47169.1

1 1248

Architecture

ATT

STR

ATT

STR

ATT 1-62 | STR 63-190 | ATT 191-429 | STR 430-1155 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0435	ATT	DC_0435	1	62	Novel HMM	DC_0435	N-terminal	Low	Positional only	79 proteins / 79 hits
SSF69349	STR	SSF69349	4	197	Merged direct domain	SSF69349	Central	Low	Positional only	153 proteins / 153 hits
IPR041352	ATT	DC_0533	5	43	InterPro cluster	Major tropism determinant, N-terminal domain	Central	Medium	Text match	295 proteins / 296 hits
DC_0723	STR	DC_0723	119	174	Novel HMM	DC_0723	Central	Low	Positional only	9 proteins / 9 hits
IPR008160	STR	DC_0536	141	198	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1016	ATT	DC_1016	191	429	Novel HMM	DC_1016	N-terminal	Low	Positional only	8 proteins / 8 hits
IPR036514	STR	IPR036514	429	619	Merged direct domain	SGNH hydrolase superfamily	Central	Low	Positional only	180 proteins / 180 hits
SSF52266	STR	SSF52266	435	614	Merged direct domain	SSF52266	Central	Low	Positional only	227 proteins / 227 hits
cd00229	ENZ	DC_0001	439	613	InterPro cluster	cd00229	C-terminal	High	Text match	480 proteins / 783 hits
IPR013830	ENZ	DC_0001	441	604	InterPro cluster	SGNH hydrolase-type esterase domain	C-terminal	High	Text match	480 proteins / 783 hits
DC_2200	STR	DC_2200	620	671	Novel HMM	DC_2200	Central	Low	Positional only	3 proteins / 3 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	672	804	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
IPR008979	STR	IPR008979	673	806	Merged direct domain	Galactose-binding-like domain superfamily	Central	Low	Positional only	24 proteins / 24 hits
IPR012334	STR	IPR012334	805	1113	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR052063	Unmapped	-	806	1243	InterPro	Polysaccharide Lyase 1	-	-	-	-
IPR011050	STR	IPR011050	813	1155	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

AGO47169.1

1 1248

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	293	293	0,9951
Central domain	294	492	200	0,6669
C-terminal	493	1248	755	0,1872

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-293

Central
294-492

C-terminal
493-1248

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Cellulophaga phage phiST [NCBI]	756282	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Cellulophaga baltica [NCBI]	76594	cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota
Host	Cellulophaga sp. MM#3 [NCBI]	192170	Bacteria > Bacteroidetes > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Cellulophaga

Coding sequence (CDS)

Genbank protein accession

AGO47169.1 [NCBI]

Genbank nucleotide accession

KC821604 [NCBI]

CDS location

range 22521 -> 26267
strand +

CDS

ATGGCAATTACAATACAAATTAGAAGAGATACTGCAGCAAATTGGACATTAAATAATCCTATTTTAGCTCAAGGTGAACAAGCGTTAGAACTTGATACTCGAAAAGAAAAATTGGGTGATGGCGTTACTCGTTGGAATGATCTAGATTATAGATTGATTCAAGAAGGAGCAAAAGGTGAAGATGGTGAAGATGGAAAATCTGCTTTTGATATAGCTTTAGAAAATGGCTTTGTTGGAACTGAAGCAGAATGGCTAATTTCTTTAAAAGGTTCTGATGGATTAGTTGGCGAAAAAGGAGAAAAAGGCGATGTTGGTGAAAAAGGAGATGTTGGTGAAAAAGGTGAAAAAGGTGATGTTGGAGCGACTGGAGCTGACGGAATCCAAGGTGAAAAAGGTGATATTGGACCTACTGGATTAACTGGAGCAAAAGGAGATATTGGATTGACGGGAGCACAAGGTGAAAAAGGCGATCAAGGTGATGTTGGCGAAAAAGGTGAAAAAGGTGAAAAAGGTGATATCGGATTAACAGGAGCACAAGGTGATCAAGGAATCCAAGGAATTCAAGGCGAAAAAGGAGAAAAAGGTGATCAAGGCGAATCAGTTCCTCAAACTATAGATGATGGAAGTATTGTTGAAGCTAAGTTAGAAGATCTTGTAGTCAATAAAATAAATGATGCTGTTTCAAGTAAATTAGATTCAGAACCTACAAAAACCAGCAAAATATCTAATCTAGTAAATGTTAATGAATTTAATTATCAAGTTGCATTAAATAGACAAGAATTAGTCGAAGGAACATCTTACGTACAAACAGAAATTGAAGACGATGTTTTAAATATTGATGTTGTAAATAGTACGTTTGTAAATCTATTAGAGCCATACGATTATATTTCTGAATCACATATGATTCGTGATAGTATTTTTGATTATGATGCAAGAGGTGGTTGGGAATATAGAGGCTCAGAAACAACAGCGATTCCAGTATCTTGGTCAAAACCAACTACAACAAATGTTTTTGGATCAGGATATAATGCTACAGTATGGGGAGCAGCTTTTACAGTAAAAGGTGATTTTGCCGTTAGAGTTGCAGGCTCTGACGATAGTATGGCTAGACAAAGAATTTTTATCAACGGAAAACCATATCTTTTTGAAAATAAAAATGGTTTGCCTGATGGTGGAACTAGAAGATGGGCTGTTTTTCAAATGAAAAAAGGTAAAACTTATGAAATTAAAGTAGAGTTTTCGCAAGCAGGTTCATTTTATGGATTCAAGACTGAAGTTGGAGGATTCGTTGAAGCATTAAAGCCAAAAGAAACAGTATTCTTTTTCGGTGATAGTATTACAGCATCTACAGGAGCATCTAAGGGTGGTTATGGATATTCGCATATGATTTTTACAGGTAAAAATACAAACGTTTTATCTTCTGGAATTGGTGGAACTGGTTATGTTAATAATTTGAGTGGAACTCAATATAACTTACCTGAAAGGATTGTTAAAAATTATAATGATGTAGTTGCTGAATCAGGAATACCAGATAAGGTTGTTATTGCGATGGGTGTGAATGATTTAGGTTTGACGGGAATATTAGATGGAATGAATAATTCTTTCGATTTACTTAGAACTGTTTATGATGGCGAAGTGTTTGTTTTAAATTCATTTAATCCAAGCGCTCCAACAATATCAACAGCTTACCAAAGTTTTACAGATGATCTTATCAGCGCAATTGGTGATAGAGAAGGATTCACTTTTGTAGATATATCAGAACTTTCTTATTCGAAATTTGATACAGTTCATCCAGATGATGAAGGGCATGCAACTATAGCAGAATTTTTATATCCATATTTGGTTGATGAATCAAAATATTTAGATACAAAAATCATTACATCTGAAGAAATTGAAGATTTGCCTATTTCTAAAATTGCAGGTCTTGAGGATGCATTGATAGATGTAGTAAAAGATAAGCCCGTAAGTGTAATAAAAAACTTACATAAAACATCTGATCCAACTAGCTTAATAAATGAATCAAATATAATTAATGCTTGGTCTAAAAATAATACAAGTTTAACTTTAAGTTCTGATAATACTGATAGTGTTAGAGGAGCATTAAGTTTAAAAGCTTCCAAGACAGTTGCGGGTTCAGCAGTATTTTATACTCCTAACTATACAGTTGAATTAGGTAAGGAATACATATTCACTTGTAAAGTAAAAGTAGGTGGAGGTTTTATCACAGGAAGTACTATGTATTCTTCTGAAAAATCAGGAGCGTTTGTGCAAACACCTATAGATCATACTATTACTGAATGGCAAACATTAACTCAAACATTAAGTTTTTCAAAAGAAAGAACTAGATTTACATTTAGTATGTCAGTACAAGAAGTAGGTGCTTTTCTATTAGTTGATGATATTGAATTTTATGAAGTATCAGATACTATAAAAGCATTTCCAAATGCAGAAGGATTTGGAGCAATATCTACAGGAGGTAGAACTGGTACAGTTAAATTTGTGACAAACTTAAATGACAGTGGAGCAGGCAGTTTAAGAGAAGCTTGCAGTACATCTTTTTCTTATATTGTGTTTTTGATTGCAGGAACAATAGAGCTAGATTCACCTATATTTGTTGAAAGTAATGTTAGTATTTATGGCCAAACAGCATTTAGAAATGGAGGACAAGGCATAACTCTTAGAGCTTCTAGCACTAATGAAGCTAGTTTAATGGTGTTTAATTCAGGAAATGAAAACTTGGTTATACAATACATTAGATTTAGAAGAGGTATGACGCCTTTTGTAACTTCTGCGACAGCAGGTCAAACATTAGCTTTAACGGGAGATGCATCTAAAATTATAGTAGATCATTGTTCTTTTGGATGGGATGAAGATGAAAGTCTTACTATTTGGGGAGTGTTAGATGTAACAGTATCTAATTCTACTATAACTAACTCTCTTAAAGTGAACCAGTATGGAAGAGAAAAAACTAGTAAAAGTTTAATTATAGGTAATGGTTCAGATAGAGTATCTATTTATACCACACTTATAGGAAATGCTGATCAAAGAAATGCTTTATTTGGAGGATCAACTTTACCAATTGAATCATTTGAATTTAAGAACAATCTTATTTTCAACTGGGGTAATATTGGTACAGATTTTCTTGGAGGTCAATTACCACTTAAAGTTAATATTATAGGAAACAAATGGAAGATAGGTAATAATTCTATTTTAAATAGACATGGTTTAAGAGCTACAGGAAATACTGGGGATAAGTTCTATCTTAAAGGCAATATAAATCTAAATAGACCTACAGATGATTTAGATGAATGGTTAGCTATCGGAGATTCTGCTACACCTTCAGCTAATTTATCAACTACATTTCAAGAACTTACACCTTTTGATTTTCCATTAGAGAATGCGAAAACATATTCTATAGAAGAATTAGAAGGAGAAGTACTTAATCAAATGGGAGCTAGTTTATATGTAGATAAACCAGATAGATTATCTAAAAGAGATTACTTAGATGGTACGGGTTCTCATATTAACAACCAAGAAGATGTAGGTGGATTTCCAACATTATCAGATTTAACGTCTCCAATAATAGATCCATTGAATATAGGTATAGATGAAGAATTTGCTAATGCTCATGGCATAACATCTTCTAATCAAATAAAATTATCATATGATTTTGGAACGTGGATATTTGATAATTCGCTAGGGTATGAAGCTATAGAAGTTTATGCTTACTGGTTAACTAAAAATTAA

Genome Context

Tertiary structure

PDB ID

ade7e878e7429949e8eee7ff8fb7e75aa20f96fa2e43da6e961b1bb59535924d

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6082

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence