Protein

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Genbank accession
QDH50632.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MEVYNTNQLDPGQVDPITTVLSVDSPTQITLSTAPISDGAGSLDFISTGSLSEVSVSSLTGLYSGLVVTVASGTGVLPANTTILSIDSQTNTIVLSADPTTAGVCTFLFSPPFGSPSNSFSYTITNLGAVESIEIAEEGIGYFIDDLLTVNPSDLVSPIEIPVKNVTVASVTFTTTVSSSAFSVGDQIELSDGNSQVPGEVYDVITSGANIVSLLITPDFQIGDEIRVIGSGNNYTIDTLSTGFRYFLNTGSGYVLTPDLTFYVGNTYKFDLSDVSNTDHVFSLSEFRDGKWSPSLVENVSTTLDTLSYDITVASSSGILPGMAVSVSSGIGELNQLTQVVSVNGNTITLDTYPITSGNAVLTFRGVEYTDNVTREESALILKVTDTTPQLYYYCNSLDGHDNEGGTDNNEAVITIDPNNPKVFGSGFELRVLSVQSNSTVSFDIATGTGDFDLVESVGGNFNTITVESSVNTTNLEAGSISTSSISAQDSVAGISVASKINVSGNVTVGTGGFSIAASTGDLNSPGYVFSNQYFNSQNKLKIEGKTITATVAEDLEISPFTGRIAKVTGSTALVIPVGNNTDRPGPGVRQSGAIRFNTETNQYEGYNASTTTWSSLGGVRDIDGNTYILAELNPGDNDNTLWFYNDSVNTLKLTPNFLDFRSVKKISSGRLGLPTFQEWTANTSVSVGQFIKFRNNLYEVTGAGSTATVGSEPTHTSGVQNNGTAQFTWYSPAVSPLSFTEIEELRVAPDKDAPLIVNQSLKLGGKTAEEWNTISTLVEDLTLEPNDGKKVVIKANTHLAIPAGNNNQKNTASAIPGSIRFNTEIQQFEGYSGTNWSSLGGVRDVDGNTYIIPETAPAANENILYFYNDNLNTMQLSTTALDLTNIDTITTSGLNNLSLDTPLVTLNLNDTTIDNRDVTRTFISSSKQYLDLGLSSGLNVDPVLRLDDQGDVYLNTTFGTGTFNGVKVFDGELKEFELADYAIKTTTFSLGKGAAETSAVDLYSSITNKGCKVTVVSKSSSGKRSISEYSVIDDGTDIYHNEFGSLNTSLDQYTASFDYNATNDVRITLTLTDDHVNGDIISFTVLTQVIK
Physico‐chemical
properties
protein length:1092 AA
molecular weight: 116117,47120 Da
isoelectric point:4,18599
aromaticity:0,08150
hydropathy:-0,10064

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-B43
[NCBI] 		2484638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDH50632.1 [NCBI]
Genbank nucleotide accession
MN018232 [NCBI]
CDS location
range 158988 -> 162266
strand +
CDS
ATGGAGGTATATAATACAAACCAATTAGATCCTGGACAAGTTGATCCAATCACAACTGTTTTAAGTGTTGATAGTCCAACTCAAATAACATTGTCCACTGCTCCAATATCTGATGGGGCAGGATCTCTTGATTTTATATCCACTGGATCATTAAGTGAGGTATCAGTTTCTTCACTTACTGGTTTGTATTCTGGTTTGGTGGTAACAGTTGCTTCTGGAACTGGCGTTTTGCCAGCAAATACTACAATTTTATCAATTGATTCTCAAACAAATACAATTGTCTTATCAGCAGATCCAACTACAGCAGGAGTCTGTACATTTTTATTCTCCCCTCCTTTTGGGTCTCCATCAAATTCGTTTTCTTACACAATTACAAATCTAGGTGCTGTAGAAAGCATAGAAATTGCAGAAGAGGGAATTGGATATTTTATAGATGATTTACTAACCGTAAATCCATCTGATTTAGTAAGTCCTATAGAAATACCAGTAAAAAATGTTACGGTAGCATCAGTAACATTTACTACAACAGTTTCATCATCCGCTTTTTCTGTTGGAGATCAAATTGAATTATCTGATGGCAATTCACAAGTTCCTGGAGAAGTATATGATGTGATTACTTCAGGTGCAAATATTGTTTCTTTGTTAATTACCCCTGATTTTCAGATTGGTGATGAAATACGAGTAATTGGATCTGGAAATAATTATACAATCGATACTCTTTCCACAGGATTTAGATATTTTCTGAATACTGGTTCTGGATATGTTTTGACTCCAGATTTAACTTTTTATGTTGGAAATACATATAAATTTGATTTAAGTGATGTATCAAATACTGATCATGTATTTTCACTAAGTGAGTTTAGAGATGGTAAATGGAGTCCCAGTCTTGTAGAGAATGTTTCTACAACTTTAGATACATTAAGTTATGATATAACTGTTGCTTCTTCGTCTGGTATTCTTCCAGGGATGGCGGTATCGGTTTCTTCTGGAATTGGTGAGTTAAATCAATTAACTCAAGTAGTATCTGTAAATGGAAATACAATTACTTTAGATACATACCCAATTACTTCAGGAAATGCTGTTCTTACTTTCCGTGGAGTTGAATATACAGATAACGTAACAAGAGAAGAATCGGCTTTAATACTTAAAGTAACAGATACTACCCCACAATTATATTACTATTGCAATTCTCTTGATGGTCACGACAATGAGGGTGGAACTGATAATAATGAAGCTGTTATCACAATAGATCCAAACAATCCAAAGGTATTTGGATCTGGATTTGAATTAAGAGTTTTGTCCGTACAATCAAACTCAACTGTTTCATTTGATATTGCAACAGGAACAGGAGATTTTGATTTGGTAGAAAGCGTTGGAGGGAACTTCAATACAATTACAGTAGAATCTTCTGTCAATACCACTAATTTAGAAGCAGGTTCCATTTCTACATCTTCTATTTCTGCTCAAGATTCCGTTGCTGGAATATCGGTTGCCTCAAAAATTAATGTATCTGGAAATGTAACTGTAGGGACTGGAGGATTTAGCATTGCAGCATCTACAGGAGATTTGAATTCTCCTGGATATGTATTTTCAAATCAATATTTCAATTCACAAAATAAATTAAAAATTGAAGGAAAAACTATCACTGCAACGGTAGCAGAAGATTTAGAAATTAGTCCATTCACTGGAAGAATTGCTAAAGTAACTGGTTCAACTGCTCTTGTTATTCCTGTTGGAAACAATACAGATAGACCAGGACCAGGAGTAAGACAAAGTGGTGCAATCAGATTTAATACGGAAACAAACCAATATGAAGGATACAATGCATCTACTACAACTTGGTCCTCTCTTGGTGGTGTTCGTGATATTGATGGAAACACTTATATCTTAGCAGAATTAAATCCTGGCGACAATGATAATACATTGTGGTTCTATAATGATTCCGTCAATACATTAAAACTGACTCCAAATTTCTTAGACTTTAGATCAGTAAAGAAAATATCTTCTGGTAGATTGGGTCTACCAACATTCCAAGAGTGGACAGCAAATACTTCAGTAAGTGTTGGACAATTTATAAAATTTAGAAACAATCTTTACGAAGTTACTGGTGCTGGTAGCACTGCTACTGTTGGTAGTGAACCTACACATACCAGTGGTGTTCAAAATAATGGCACAGCACAATTCACATGGTATTCACCAGCAGTATCACCATTATCATTTACAGAAATTGAAGAGTTAAGAGTAGCACCAGATAAAGATGCTCCACTGATTGTCAATCAATCATTGAAATTGGGAGGAAAAACAGCCGAGGAGTGGAATACTATTTCTACTTTGGTAGAAGATTTGACACTAGAACCAAATGATGGCAAAAAAGTTGTAATTAAAGCAAACACTCACTTAGCAATTCCTGCTGGTAATAACAACCAAAAGAATACTGCATCTGCTATTCCTGGATCTATTAGATTTAATACCGAGATTCAACAGTTTGAGGGATATAGTGGTACTAACTGGTCTTCTCTGGGTGGGGTTCGTGACGTTGATGGTAATACTTACATTATTCCAGAAACTGCACCAGCAGCAAATGAAAATATCTTATATTTCTATAATGACAATTTGAACACAATGCAGTTATCAACAACTGCATTAGATCTCACTAACATTGATACTATTACAACATCTGGATTAAACAACCTATCTTTAGATACCCCACTGGTAACTCTAAATCTAAATGATACAACTATTGATAATAGAGATGTCACTAGAACCTTTATCAGTTCCAGTAAGCAATATCTTGATCTTGGACTTTCATCTGGACTAAATGTTGATCCCGTTTTACGCCTTGATGATCAAGGTGATGTGTATTTAAATACAACGTTTGGAACAGGAACTTTCAATGGAGTAAAAGTTTTTGATGGAGAATTGAAGGAATTTGAACTTGCAGATTATGCAATAAAAACTACTACATTTTCTCTAGGAAAAGGAGCAGCAGAAACTTCTGCTGTAGATCTATATTCTTCTATAACAAATAAAGGATGTAAAGTAACAGTTGTTTCAAAATCATCATCTGGCAAAAGATCAATTTCAGAATACTCTGTTATTGATGATGGAACAGATATTTACCACAATGAATTTGGATCTCTAAATACATCACTTGATCAATACACAGCATCGTTTGATTATAATGCTACAAATGATGTCAGAATTACACTGACACTCACAGATGATCACGTCAATGGCGATATCATTTCATTCACCGTACTAACACAGGTAATCAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e57e1ef1eb049506273bfec433cd121b7e0af8094d1f6516dca80563084d1853
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2793
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, characterization and genome sequencing of the novel cyanophage S-B43 from the Bohai Sea, China Wang,M. 2020-10 — GenBank