Protein

View in Explore
Genbank accession
YP_009017767.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MAAPTTVKVYDLDGVAKDFPVDFDYLAREFVVVTLLGGTRQELVLNVDFTFLNATTVRTSRATAWGPTDGFTTIEVRRVTSAENRLVTFNDASILRAADLNLAELQTVHIAQEARDLVTDGIGTDEEGQLDARNRRITNVLDPIEQQDAVTLNYYQSRVDEVATKHADVVTRHADIVTRHTDIISRHADITTKHDNVVAKSTNVDTKSANVDTKHAEVLVARDATFAARDDAEAAAAIVQAIEDTANNAAAEAAAATAATTGLMDNDLSLFVNGTQTRKINVKNGDHTAPGTQRATVTFDDTNTLAVTRHNQTSGAVLDVPFKVRQSDGHIELATKKLMGLADPAAATDGVNRQFLDAQSRRNLLHNTQGLVTTTGGVTVQSYFHDRWRQDIGGGAAATISEVGVTPADIVELKAALGVSARGVVGYMRYVVTNGGSGASAGFLITQMMEDVRMFHNETITFSVCARGSGTIGFSALPIWDSGNNAVGDALQVNIGTMALTSQFQRKTITFTTPTYPNFSGIGATGGAHGYAIRVWFTAGSSFATPSGIGIATPTVEMTAFQAEYKDRASAYQYVGQPHDQNDCARWFQRVNLKMRKTDTAGTFGGALLMAYYNTKMQRGLGGQPARVALFPNETGPCDVNNPGLQINGGGVFAPNTWSTFGYDSALALWNGQNGGNPTLVNVGDYATGSAIINCDL
Physico‐chemical
properties
protein length:697 AA
molecular weight: 74508,12760 Da
isoelectric point:5,41746
aromaticity:0,07317
hydropathy:-0,18407

Domains

Domains [InterPro]
DC_0324
STR
1–310
DC_0324 DC_2119
IPR005604
ATT
4–132
IPR005604
YP_009017767.1
1 697
Architecture
ATT
STR
STR
ATT 1-132 | STR 133-310 | STR 411-524 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RSB2
[NCBI] 		913183 Uroviricota > Caudoviricetes > Autographivirales > Kelmasvirus > Kelmasvirus RSB2
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009017767.1 [NCBI]
Genbank nucleotide accession
NC_023736.1 [NCBI]
CDS location
range 34879 -> 36972
strand +
CDS
ATGGCCGCACCTACTACTGTCAAGGTGTATGACCTCGATGGTGTCGCAAAGGACTTCCCGGTAGACTTCGATTACCTCGCACGGGAGTTCGTCGTGGTGACCCTTCTGGGGGGCACCCGGCAGGAACTGGTCCTGAATGTGGACTTCACGTTCCTGAACGCGACCACCGTGAGGACCTCGCGGGCTACCGCATGGGGTCCCACTGATGGCTTCACCACCATCGAAGTCCGCCGAGTGACCAGCGCGGAGAACCGTCTGGTGACCTTCAACGACGCCTCCATCCTGCGCGCCGCTGACCTGAATCTGGCTGAACTGCAAACCGTCCACATCGCCCAAGAGGCGCGTGATCTGGTGACTGACGGCATCGGCACTGACGAGGAGGGCCAGCTTGACGCCCGGAACCGCCGCATCACCAACGTGCTCGACCCCATCGAGCAGCAGGACGCTGTTACGCTGAACTACTACCAGTCCCGTGTGGATGAGGTGGCTACTAAGCACGCCGATGTTGTGACCCGCCACGCGGACATAGTGACCCGCCACACGGACATCATCTCCCGCCACGCCGACATCACCACGAAGCATGACAACGTGGTCGCCAAGTCCACCAACGTGGATACCAAGTCGGCCAACGTAGACACGAAGCACGCCGAAGTTCTGGTGGCCCGTGACGCCACGTTCGCGGCCCGGGATGATGCAGAGGCCGCAGCCGCTATCGTCCAAGCCATCGAGGACACAGCGAACAACGCAGCAGCCGAGGCCGCAGCAGCAACCGCAGCCACTACCGGCCTGATGGACAACGATCTCAGCCTGTTCGTGAACGGCACGCAGACCCGTAAGATCAACGTCAAGAACGGGGACCACACCGCCCCGGGAACCCAGCGGGCAACCGTTACGTTTGACGACACGAACACCCTCGCGGTGACCCGTCACAATCAAACGTCCGGGGCTGTGCTGGATGTGCCCTTCAAGGTGCGCCAGTCGGACGGTCACATCGAACTTGCCACCAAGAAGTTGATGGGATTGGCGGACCCGGCAGCAGCCACGGATGGCGTGAACCGGCAGTTCCTTGATGCTCAGTCGCGCCGCAACCTACTGCACAACACGCAGGGTCTGGTGACCACCACTGGGGGCGTGACTGTTCAAAGCTATTTCCATGATCGCTGGCGTCAGGACATCGGCGGTGGCGCCGCTGCAACCATCTCCGAAGTTGGCGTGACCCCCGCTGACATTGTGGAACTCAAGGCGGCCCTCGGGGTATCTGCTCGGGGTGTCGTGGGGTATATGCGCTACGTTGTCACCAACGGAGGCTCGGGCGCCTCTGCGGGGTTCCTCATCACGCAGATGATGGAGGATGTCCGAATGTTCCACAACGAGACCATCACGTTCAGCGTGTGCGCTCGCGGGTCTGGAACCATTGGGTTCAGCGCACTCCCCATCTGGGACAGCGGGAATAACGCAGTGGGGGATGCCCTTCAGGTGAACATCGGGACGATGGCTCTCACCTCGCAGTTCCAGCGGAAGACCATCACGTTCACCACGCCTACCTATCCTAACTTCTCTGGGATCGGCGCAACTGGTGGCGCCCACGGGTACGCCATCCGGGTGTGGTTCACCGCAGGGTCCTCGTTCGCCACCCCCTCGGGAATCGGGATCGCCACCCCTACTGTGGAGATGACCGCCTTCCAAGCGGAGTACAAGGACCGCGCAAGCGCGTACCAGTACGTGGGACAGCCGCACGACCAGAACGATTGTGCTAGGTGGTTCCAGCGCGTGAACCTGAAGATGCGCAAGACGGACACCGCTGGCACCTTCGGCGGCGCCCTGCTGATGGCTTACTACAACACGAAGATGCAGCGCGGCCTTGGCGGACAGCCCGCACGGGTGGCGTTGTTCCCGAACGAGACCGGCCCGTGCGACGTGAACAACCCGGGCCTCCAGATCAACGGCGGCGGGGTGTTCGCCCCCAACACTTGGTCCACCTTCGGGTATGACAGTGCGTTGGCTCTGTGGAATGGCCAGAACGGAGGCAACCCCACTCTTGTAAACGTGGGCGACTACGCGACCGGCTCGGCAATCATCAACTGCGACCTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
14416428ee8f4481098698cdd1a822e7f00942e5efec8041a49c7402c94b5814
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7309
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Ralstonia solanacearum phages RSB2 and RSB3 Kawasaki,T., Ishikawa,H., Shimizu,M., Omoto,W., Fujie,M. and Yamada,T. 2020 — GenBank