Protein

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Genbank accession

CUL03403.1 [GenBank]

Protein name

Phage Tail Collar Domain protein

RBP type

Evidence UniProt/TrEMBL

Probability 1,00

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,55

Evidence RBPdetect2

Probability 0,92

Protein sequence

MATLKQIQFKRSKTAGARPAASVLAEGELAINLKDRTIFTKDDSGNIIDLGIAKGGQIDGNVTINGLLRLNGDYVQTGGMTVNGPIGSTDGVTAKVFRSTQGSFYARATNDTANAHLWFENTNGSERGVLYSKPQSENEGVITMRVRQGTAAGAQNSEFHFISTDGGIFQARKLTALTSISTPTISVNLINHDSKAFGQYDSQSLVQYVYPGTGETNGVNYLRKVRSKSGGTIYHEICTAQTGLADEMSWWTGNTPLFKLYGIRNDGRMIIRNSLAIGTVTQGFPSSDYGNAGALGNIFLALGDNGTGLVYRKTGVFDFVGSGLSLASITPDSFRSTRKAIFGRSEDQGTTWIMPGTNAAFLSVQTQADENTAGDGQTHIGYNSGGKMNHYFRGKGKTNINTQEGMEVNPGILKLVTGSNNVQFYADGTVSSIQRIKFDNGLVLTGARPDGIQLDAPTTTDGTKTILWAAGTRPGQNKSYLSIKAWGNAFNASGNRARETVFQVSDGQGYHFYSQRVAPGSGSTVGPIQFRVNGGLLTSGGITSSGSIVTESSLVANNGLSVNGQAKFGGTADALRIWNAEYGAIFRRSETSFYIIPTLKDAGKSGGISNLRPFTINLANGSVMIGNHTQAGKNLLTIDNVSKFVQTDVRLRVNMDSDGIVLNASSQASSNFIQGRKADVTKWYLGIGDGGNVVRMHNYTYSHGIALNADTVDITKPLKINNIRIGTDGNITGGSGNFANLNTTINNLKTDIVSSYPIGAPIPWPTDTPPEGYAIMEGQTFDADLYPKLAAVYPSGTLPDMRGQTIKGKPSGRAVLSTEADGVKSHSHSASASSTDLGTKTTSSFDYGSKTTSSFDYGTKTSNTTGNHSHTVSGNTSSAGAHQHSQTGPRGTNNQPTGIYPNGSTRISGTLVVGFGLSNGVVPGTSQYIAKSSTEGNHTHTWSGTTSSTGNHAHTVGIGAHSHSVGIGAHTHTVAIGSHGHTITVNSTGNTENTVKNIAFNYIVRLA

Physico‐chemical properties

protein length:	1007 AA
molecular weight:	106217,39210 Da
isoelectric point:	9,30525
aromaticity:	0,07646
hydropathy:	-0,34508

Domains

Domains [InterPro]

DC_0538
STR
1–1005

DC_0538

IPR051934
Unmapped
615–1007

IPR051934

G3DSA:6.20.80.10
STR
659–716

G3DSA:6.20.80.10 SSF88874 SSF88874

IPR048388
ATT
659–733

IPR048388 IPR037053

IPR011083
ATT
759–806

IPR011083

CUL03403.1

1 1007

Architecture

STR

ATT

STR

ATT

STR

STR 1-658 | ATT 659-733 | STR 734-753 | ATT 754-807 | STR 808-1006 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0538	STR	DC_0538	1	1005	Novel HMM	DC_0538	Central	Low	Positional only	380 proteins / 380 hits
IPR051934	Unmapped	-	615	1007	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
G3DSA:6.20.80.10	STR	G3DSA:6.20.80.10	659	716	Merged direct domain	G3DSA:6.20.80.10	Central	Low	Positional only	37 proteins / 37 hits
IPR048388	ATT	DC_0224	659	733	InterPro cluster	Tail fibre protein gp37, trimerization region	Central	Medium	Text match	404 proteins / 802 hits
SSF88874	STR	SSF88874	747	899	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	754	807	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	759	806	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
SSF88874	STR	SSF88874	908	1006	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

CUL03403.1

1 1007

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	407	407	0,1007
Central domain	408	606	200	0,2123
C-terminal	607	1007	400	0,9029

Note: Constraints were applied during segmentation.
Fixed 351 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-407

Central
408-606

C-terminal
607-1007

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Escherichia phage slur14 [NCBI]	1720504	Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tequatrovirus
Host	Escherichia coli [NCBI]	562	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

CUL03403.1 [NCBI]

Genbank nucleotide accession

LN881736 [NCBI]

CDS location

range 95668 -> 98691
strand +

CDS

ATGGCTACTTTAAAACAAATACAATTTAAAAGAAGCAAAACCGCAGGTGCACGTCCTGCTGCTTCAGTATTAGCCGAAGGTGAATTGGCTATAAACTTAAAAGATAGAACAATTTTTACTAAAGATGATTCAGGAAATATCATTGATTTAGGTATTGCTAAAGGCGGTCAAATTGATGGAAATGTAACTATCAATGGTCTTTTGAGATTAAATGGCGATTATGTACAAACGGGTGGAATGACTGTAAATGGACCTATTGGTTCTACTGATGGCGTAACAGCAAAAGTTTTCAGATCTACACAGGGTTCATTTTATGCAAGAGCAACAAACGATACTGCAAATGCCCATCTTTGGTTTGAAAATACAAATGGCTCAGAACGTGGCGTTTTATATTCAAAACCGCAGTCTGAAAATGAAGGCGTAATTACAATGCGTGTTCGTCAAGGAACCGCTGCGGGAGCTCAAAATTCAGAATTTCATTTCATTTCTACTGATGGTGGTATCTTCCAGGCACGCAAATTAACTGCTTTAACTTCTATTAGTACACCAACTATTAGTGTTAATTTAATTAATCATGATTCTAAAGCCTTTGGACAATACGATTCACAATCATTGGTTCAGTATGTTTATCCTGGAACTGGTGAAACAAACGGTGTAAACTATCTTCGTAAAGTTCGATCTAAGTCAGGCGGAACTATTTACCATGAAATTTGTACAGCTCAGACTGGACTGGCAGATGAAATGTCATGGTGGACTGGTAATACACCGTTATTTAAACTATATGGTATTCGTAACGACGGTAGAATGATTATTCGCAATAGCTTGGCCATTGGTACTGTGACGCAAGGGTTTCCGTCAAGCGATTATGGAAATGCTGGGGCACTAGGAAATATATTTCTTGCTTTAGGCGATAATGGAACTGGTCTAGTTTATAGAAAAACTGGTGTATTTGATTTCGTTGGTTCTGGTTTATCTTTGGCATCTATCACACCTGATAGTTTCCGTAGTACTCGTAAAGCAATATTTGGACGCTCAGAAGACCAAGGTACAACATGGATTATGCCTGGAACGAACGCTGCATTTTTATCAGTTCAAACACAAGCTGATGAAAACACTGCTGGAGACGGTCAGACACATATTGGCTATAACTCAGGCGGAAAAATGAACCACTATTTCCGTGGTAAAGGCAAAACTAATATTAATACTCAAGAAGGCATGGAAGTTAACCCGGGTATTTTGAAATTGGTAACTGGCTCTAATAACGTACAGTTTTATGCCGACGGAACAGTATCTTCAATACAAAGAATTAAATTTGATAACGGATTAGTTCTTACTGGTGCTAGACCCGACGGTATTCAACTTGACGCTCCTACAACAACAGATGGCACTAAAACTATATTGTGGGCCGCCGGTACTCGCCCAGGTCAGAATAAAAGTTATCTATCTATCAAAGCATGGGGTAATGCCTTTAATGCATCTGGCAATCGTGCTCGTGAAACAGTTTTTCAAGTATCAGATGGACAAGGTTACCATTTTTATTCTCAACGAGTTGCTCCCGGATCAGGTTCTACCGTCGGACCTATTCAATTTCGAGTTAATGGTGGTTTATTAACTTCTGGTGGTATTACATCATCTGGTTCTATTGTTACTGAATCAAGTTTAGTTGCAAATAATGGATTATCTGTAAATGGTCAGGCTAAATTCGGTGGAACAGCAGATGCGTTGAGAATTTGGAATGCTGAATACGGCGCTATTTTCCGTCGTTCAGAAACTAGCTTTTATATTATTCCTACTCTTAAAGACGCTGGTAAAAGTGGTGGAATAAGTAATTTACGCCCATTTACCATCAATCTTGCAAATGGCAGTGTTATGATTGGTAATCATACACAAGCTGGAAAAAATTTGCTTACTATTGATAATGTATCAAAATTCGTTCAGACTGATGTTAGACTTCGTGTTAACATGGATTCTGACGGTATTGTGCTCAACGCATCATCTCAAGCATCATCTAACTTTATTCAAGGACGTAAAGCAGATGTAACAAAATGGTATTTAGGTATTGGCGATGGTGGTAATGTTGTTCGTATGCATAATTACACTTACTCCCACGGCATTGCATTGAATGCTGATACAGTCGATATTACTAAGCCTCTTAAAATTAATAATATTCGAATTGGTACTGACGGTAACATCACAGGTGGTTCTGGTAATTTTGCTAACTTGAATACCACAATAAATAACCTTAAGACGGATATTGTCTCAAGTTATCCTATTGGTGCTCCGATTCCTTGGCCTACTGATACACCTCCTGAAGGTTATGCCATAATGGAAGGTCAAACATTTGATGCTGACTTGTATCCTAAGTTAGCTGCGGTGTATCCTTCCGGCACTCTGCCTGATATGCGTGGTCAAACTATCAAGGGTAAACCATCCGGGCGTGCTGTATTGAGTACAGAAGCAGACGGTGTTAAGTCACATAGCCATAGTGCAAGTGCATCAAGCACAGATTTGGGTACTAAGACCACTTCTAGTTTTGATTACGGTAGCAAAACGACTTCAAGCTTTGATTATGGTACTAAGACCAGTAATACCACTGGTAACCATAGCCATACAGTGAGTGGTAATACTAGTTCCGCTGGTGCGCACCAACACTCACAAACCGGTCCAAGGGGTACTAATAATCAACCCACAGGAATATATCCTAATGGATCTACTCGAATTAGCGGAACCCTGGTTGTTGGTTTTGGCCTAAGCAACGGTGTTGTGCCTGGTACAAGCCAATATATTGCAAAGTCGTCAACAGAAGGTAACCATACCCATACTTGGTCTGGTACTACTAGCTCTACGGGTAACCACGCGCATACTGTAGGTATCGGTGCCCATAGCCATTCGGTCGGTATTGGTGCTCATACCCACACGGTAGCTATTGGTTCGCACGGACATACTATCACTGTAAATAGTACAGGTAATACAGAAAACACGGTTAAAAACATTGCTTTTAACTATATCGTTCGTTTAGCATAA

Genome Context

Tertiary structure

PDB ID

8a548d23b27ae179b5d91d9fc6044f85d80e0c5ed33ed128b96516d2349801eb

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,5512

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence