Protein

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Genbank accession
WPK40338.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKLGKFNHNGNLHIKYRPAPLVDVGPVLQYKFLANEPLDEATESMSISSGTVSIQNSSMYTSGSTVNNYFYRKLPSILKNTKFTIELTIRSEGEIPSTSNIIGTWNPSNEFWLLSVINNNLVFQWNNGTATTGTRQVFTFSNVQVPSDQDVHLAVCRDDTMLYGFVNGQLAGSFEVSFAGHTNVVSGSIFSTRSMATTNNYFNGYRKNIRIVNDKALYVAPFTLASVTMADVKPDYYTPEDASLVVGQITCKRNSLFQETMNTPTLLLTGLSNSTTGRFVTTTNNTSGFQFSPVTNWQSGDYTIELYINLSTVGAGGAILIGQWTSSGGTDIGWSISMQQNGSVRHFYSTDGLYDQANGNSGVLQAPNGTLVLNKDTHVCAMRKNGVIGLFVDGVRLAQVNEARPLWNSQIPIRNTWTAPADGYALAERWNIRCISKAMYDIDGFVPPVRLPTFPNLLTNTGSYSRSVLSGTTTTADTMGNIIQFNSSGQTSGGGYQKYFIYGSKKVEIIGNTISSDSTQQMRYGLSNTTPTTFAESESDFNSGTFPYAYADRINSVIQIVKQGSVIGSLPHSTANHTFKITYDFENNQFTYAVTSGTAQGQSVTTSLDSTITQNTKFAVCGTKSNIQITSVKIQQ
Physico‐chemical
properties
protein length:636 AA
molecular weight: 69486,78860 Da
isoelectric point:7,61457
aromaticity:0,10377
hydropathy:-0,23899

Domains

Domains [InterPro]
G3DSA:2.60.120.200
STR
25–217
G3DSA:2.60.120.200 G3DSA:2.60.120.200 DC_0816
IPR013320
STR
46–213
IPR013320 IPR013320
IPR013320
STR
46–225
IPR013320 PF13385
PF13385
LEC
77–214
PF13385
DC_2085
STR
175–428
DC_2085
WPK40338.1
1 636
Architecture
STR
RBD
STR 25-428 | RBD 429-636
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK40338.1
1 636
Domain Start End Length (AA) Confidence
N-terminal 1 132 132 0,1842
Central domain 133 331 200 0,2534
C-terminal 332 636 304 0,8794
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-132
Central
133-331
C-terminal
332-636

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Paride
[NCBI] 		3092178 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK40338.1 [NCBI]
Genbank nucleotide accession
OR805295 [NCBI]
CDS location
range 85563 -> 87473
strand +
CDS
ATGAAATTAGGAAAATTTAATCATAACGGAAATTTACATATAAAATATAGACCGGCACCGTTAGTCGATGTAGGTCCTGTCCTACAATATAAATTTCTAGCAAATGAACCATTAGACGAAGCAACAGAATCGATGTCGATTTCGTCTGGTACAGTTTCTATACAAAATAGTTCGATGTATACTTCCGGCAGCACAGTAAACAATTATTTCTATAGAAAATTACCTAGTATACTTAAAAATACCAAATTTACAATAGAACTGACAATAAGGTCAGAAGGCGAAATTCCGTCTACTAGTAATATAATAGGTACATGGAATCCATCTAACGAATTTTGGTTGTTATCTGTAATTAACAACAATTTAGTATTTCAGTGGAATAATGGAACTGCCACTACCGGTACTAGACAAGTATTTACATTTAGTAATGTACAAGTACCTTCAGACCAAGACGTCCATTTAGCCGTATGTAGAGATGACACTATGTTATATGGATTTGTAAATGGACAACTGGCAGGTTCGTTTGAAGTGTCATTTGCAGGACATACTAATGTTGTATCGGGGTCTATATTCTCTACAAGAAGCATGGCCACCACAAATAACTATTTTAATGGATATAGAAAAAATATTAGAATAGTAAATGACAAGGCATTATATGTTGCACCATTCACACTAGCTAGCGTAACTATGGCTGATGTAAAGCCAGACTACTATACCCCGGAAGATGCTAGCTTAGTAGTAGGTCAAATAACATGTAAACGAAATTCATTGTTCCAAGAAACTATGAATACTCCTACTTTACTACTTACGGGTTTATCTAATTCTACAACAGGACGATTTGTAACAACTACTAATAATACTTCTGGCTTCCAATTTTCTCCTGTAACAAATTGGCAATCGGGTGATTACACAATAGAATTATATATAAACTTATCTACAGTAGGCGCTGGCGGCGCCATACTAATAGGTCAATGGACATCTTCGGGTGGCACCGACATCGGATGGTCTATTTCTATGCAACAAAACGGAAGCGTCAGGCATTTCTATTCCACTGACGGATTATACGACCAAGCAAACGGTAACTCTGGAGTATTGCAAGCACCTAATGGTACTTTAGTATTAAACAAAGATACCCATGTATGTGCAATGAGGAAAAATGGAGTAATAGGATTATTTGTAGATGGTGTTAGACTAGCCCAGGTAAACGAGGCAAGGCCATTATGGAATAGTCAAATACCCATTAGAAACACATGGACTGCGCCAGCAGATGGATATGCATTAGCAGAACGCTGGAATATAAGATGTATTTCTAAAGCAATGTATGATATAGACGGTTTCGTTCCGCCGGTTCGTTTACCTACATTTCCTAATTTATTAACAAATACAGGTAGTTATTCGCGCTCTGTGTTGTCTGGCACAACTACTACAGCAGATACAATGGGAAATATTATACAATTTAATTCTTCAGGACAAACATCCGGCGGCGGCTACCAAAAATATTTTATATATGGTTCTAAAAAAGTAGAAATAATAGGAAATACCATATCTTCAGATTCAACACAACAAATGAGATATGGCTTATCAAACACAACTCCTACCACATTTGCAGAGTCAGAATCTGATTTTAATTCCGGTACATTCCCGTATGCGTATGCCGATAGAATTAACAGTGTCATTCAAATAGTTAAACAAGGTAGTGTTATAGGTAGTTTGCCTCATTCTACTGCCAACCACACCTTTAAAATAACATATGATTTCGAAAATAATCAGTTTACTTATGCAGTTACTTCTGGCACTGCACAAGGACAATCTGTTACTACAAGTCTAGATTCTACAATAACACAGAATACTAAGTTTGCAGTATGTGGGACCAAATCTAATATACAAATAACTTCTGTAAAAATACAACAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d5a0f930ca5dbb5b9cca1feb631eaeb884a06cd24e26ceaae60647dbf5f4b396
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6688
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage Paride can kill dormant, antibiotic-tolerant cells Maffei,E., Harms,A. and Humolli,D. — — GenBank