Protein

View in Explore
Genbank accession
YP_010655633.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,57
Protein sequence
MTTTIAFANTNDAYLFSGDNAYATALAGPADGVSSVSDTTLFVGQQKSGTPYTIWQAFLQFGYADTAASSTVSGYFRLTSSQVTGTSVSRALEINKFDWGTLTTADWRSPAQLAALYASPSTKSGVINSIQSASNLTARAGYLNLTDLDAAATLRYVVNTSRNRLQNTPTGLEYNGFRSADYTGTDTDPALFAAEILDSMLNRSLGAQVQLSDGSHVYLEHSSANLGNDAFTMKYRTVAGTTTNIVAISDTIGGPIKRGAQSHTIVRDSSDNLFVLYQSDTTNSLQYLVYKKNAGSWLSVRSGKQALSTYDSDINNVVAAWHPAGGSLGTLVVLCGHAAGTSSGTEVTYLLLSCDYLVNGTGSLLRGSGNAVGTLIAATSVDGFHNFTNETGTLLDISQSGGASSNTGFVMSTARHHVLGQNAGQSIARYTLNSSGTGFAEVWNFYDSFTGYSVKDANAKSRVLPVSSTQYVTVNASNTSSRGIVVKHRQQQADQFTVISEVDLDAQGISTMPAPATLAVTNTWDAIYNPRDNRVWVYYFDATGDGRRLMRTDIDLNTGQAGLQQVEVNATVGATGSSNLAIRVHRGALVGEQVLISVANLSGSTHSVISVADTINVAPSQPTLITRSNFDGTTSALFDWDFHDLNAGDTQSFYQVEIYNNTTGLIAWNSWGAFDNFTRSVTGGWGTADRGGAWTSSGGTVSTDYDTTGNVGRHVHTTRDVFRLSRMPHSVADSDMTWTVANPVVPTGDSMYTYFRSRINGAGDQYYFARLEFTTSGTAILSVRKRTPSETLLATASTSLTHTAGQAYYVRFVTKGSTLRAKAWRTQDTEPVNWDIQVTDTDLTAAGDIGVRSYVSPTNTNTLPVVLTFDDLYLRDGSSTSNYTLPASGLPNGQDWKWRVKTWDSYVVESPWSDYGFFSTSNTGVVNITDPAIDNDPNIVTANYLIRWTVSNTTQAAYNIVVTRTDTGATLVSTGWVTSTDLQYLVVGMASDVEWNVALKIRNASLIESNTANRKITPNYNRPEVPVISFDIEDDLGYIGLNITNPDPVGDRPNPTINEIHRRVYSQSNPNLPYQILGTTDPNGTFLDFTAASGVLYEYRVRAQAGEFFQDSTPTVADRELDLTGVWIHDPADSAVTVRQFVYGKDSRSHAIDTAATVQQFAGRTFPVTDFGEYETEDISISVDIPGGDTHMAEEADLRGFMEMKKTLFLRDNRGRAAYGTMSGFSQSDASWGVTVGFKFGRVSFDIEEV
Physico‐chemical
properties
protein length:1250 AA
molecular weight: 135076,15690 Da
isoelectric point:4,96968
aromaticity:0,09920
hydropathy:-0,23968

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010655633.1
1 1250
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0070
Central domain 11 221 212 0,6597
C-terminal 222 1250 1028 0,4756
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-221
C-terminal
222-1250

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptomyces phage KimJongPhill
[NCBI] 		2848886 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010655633.1 [NCBI]
Genbank nucleotide accession
NC_070830 [NCBI]
CDS location
range 21193 -> 24945
strand +
CDS
ATGACTACCACCATCGCCTTTGCCAACACAAACGACGCCTACCTGTTCTCCGGCGACAACGCGTATGCCACCGCGCTCGCCGGGCCGGCAGATGGCGTCTCGTCTGTGTCGGACACCACGCTGTTCGTGGGCCAGCAGAAGTCGGGTACCCCGTACACCATCTGGCAGGCCTTCCTCCAGTTCGGGTACGCGGACACCGCGGCATCCAGCACGGTCTCCGGATACTTCCGCCTGACGTCCAGCCAGGTGACAGGTACCTCGGTCAGCCGTGCCCTGGAGATCAACAAGTTCGACTGGGGCACTCTCACCACCGCGGACTGGCGATCGCCGGCACAGCTCGCCGCGCTGTACGCCAGCCCGTCCACTAAGTCCGGTGTGATCAACAGTATCCAATCCGCGTCGAACCTGACGGCACGAGCCGGGTACCTGAACCTCACCGACCTGGACGCAGCGGCCACGCTGCGGTACGTGGTGAACACGAGCCGGAACCGTCTCCAGAACACCCCGACCGGACTGGAGTACAACGGCTTCCGCTCGGCGGACTACACGGGCACTGACACGGACCCGGCTCTGTTCGCAGCCGAGATCCTGGATTCGATGCTGAACCGCAGCCTCGGTGCCCAGGTTCAACTCTCGGACGGTAGCCACGTCTACCTGGAGCACTCGTCGGCGAACCTCGGTAACGACGCGTTCACCATGAAGTATCGCACCGTGGCGGGCACCACCACGAACATCGTGGCCATCTCCGACACCATCGGGGGCCCGATCAAGCGGGGTGCCCAGTCCCACACCATCGTGCGTGACTCGTCGGACAACCTGTTCGTCCTCTACCAGTCGGACACCACGAACTCCCTCCAGTACCTCGTGTACAAGAAGAACGCGGGATCCTGGCTGTCCGTCCGCTCGGGTAAGCAGGCACTGTCCACGTATGACTCAGACATCAACAACGTGGTGGCCGCGTGGCACCCTGCCGGCGGTAGCCTCGGTACCCTCGTCGTTCTGTGCGGTCACGCGGCGGGCACAAGCTCCGGCACCGAGGTAACGTACCTCCTGCTGTCCTGTGACTACCTCGTCAACGGTACGGGCTCACTGCTCCGCGGATCCGGCAACGCGGTCGGCACCCTCATCGCCGCCACGTCGGTGGATGGCTTCCACAACTTCACGAACGAGACCGGCACGCTCCTCGACATCTCCCAGTCGGGCGGCGCCAGCTCCAACACGGGTTTCGTCATGAGCACCGCGCGGCACCACGTGCTCGGTCAGAACGCGGGACAGTCCATCGCGCGGTACACGCTGAACTCCAGCGGCACAGGCTTCGCAGAGGTGTGGAACTTCTACGACTCCTTTACCGGCTACTCGGTCAAGGACGCCAACGCCAAGTCCCGTGTCCTTCCCGTCTCGTCCACCCAGTACGTGACCGTGAACGCGTCCAACACTTCGTCCCGCGGCATCGTGGTCAAGCACCGGCAGCAGCAGGCGGACCAGTTCACGGTCATCTCCGAGGTGGACCTGGACGCTCAGGGTATCTCGACCATGCCGGCCCCGGCGACTCTCGCCGTGACCAACACGTGGGATGCCATCTACAACCCCCGGGACAACCGGGTTTGGGTGTATTACTTCGACGCCACGGGCGACGGCCGTCGGCTCATGCGTACGGACATCGACCTGAACACTGGGCAGGCCGGTCTCCAGCAAGTCGAGGTCAATGCCACGGTGGGTGCGACCGGCTCGTCCAACCTGGCGATCCGTGTCCACCGCGGAGCCCTCGTCGGGGAACAGGTTCTCATCTCGGTGGCGAACCTGTCTGGCAGCACCCACTCCGTGATCTCCGTTGCCGACACCATCAACGTGGCTCCGAGCCAGCCCACCCTGATCACGCGGTCCAACTTCGATGGCACCACTTCGGCCCTGTTCGACTGGGACTTCCACGACCTGAACGCGGGAGACACCCAGAGTTTCTACCAGGTCGAGATCTACAACAACACCACGGGCCTCATCGCGTGGAATAGCTGGGGAGCGTTCGACAACTTCACCCGCTCGGTCACCGGTGGCTGGGGAACGGCCGACCGCGGCGGTGCATGGACGTCCTCGGGCGGTACCGTCTCGACTGACTACGACACCACGGGCAACGTTGGTCGGCACGTCCACACCACCCGTGACGTGTTCCGGCTGTCGCGTATGCCGCACTCCGTGGCTGACTCGGACATGACCTGGACTGTAGCCAACCCGGTAGTGCCCACGGGTGACAGTATGTACACCTACTTCCGGTCGAGGATCAACGGGGCCGGGGACCAGTATTACTTCGCCCGGCTGGAGTTCACTACGTCCGGCACGGCCATCCTGTCTGTTCGGAAGCGGACGCCGTCGGAGACCTTGCTCGCCACCGCGTCAACGTCGCTCACTCACACCGCGGGTCAGGCCTACTACGTCCGGTTCGTCACTAAGGGCAGCACGCTCCGAGCCAAGGCCTGGAGGACCCAGGACACCGAGCCGGTCAACTGGGACATCCAGGTCACTGACACGGATCTGACCGCTGCGGGAGACATCGGCGTCCGCTCGTACGTCTCGCCGACGAACACCAACACCCTCCCCGTTGTCCTGACGTTCGATGACCTGTACCTCCGAGACGGGAGCTCCACCTCCAACTACACCCTTCCCGCCTCGGGCCTGCCCAACGGCCAGGACTGGAAGTGGAGGGTTAAGACCTGGGACTCCTACGTGGTGGAGAGCCCGTGGTCGGATTACGGGTTCTTCTCGACCTCGAACACTGGCGTGGTCAACATCACGGATCCCGCCATCGACAATGACCCCAACATCGTGACCGCCAACTACCTGATCAGGTGGACGGTCTCGAACACCACACAAGCCGCGTACAACATCGTGGTGACTCGAACCGACACCGGCGCCACTCTCGTCTCCACTGGCTGGGTCACATCCACTGACCTCCAGTACCTCGTGGTCGGCATGGCATCCGACGTCGAGTGGAACGTGGCCCTCAAGATCCGGAACGCCTCGCTCATCGAGTCGAACACGGCCAACCGCAAGATCACCCCCAACTACAACCGGCCCGAGGTCCCGGTCATCTCGTTCGACATCGAGGACGACCTGGGTTACATCGGCCTGAACATCACCAACCCGGACCCGGTCGGTGACCGACCCAACCCGACCATCAATGAGATCCACCGCCGCGTCTACAGCCAGAGCAACCCCAACCTCCCCTACCAGATCCTCGGTACCACCGACCCCAACGGCACGTTCCTCGACTTCACCGCCGCGTCTGGCGTGCTGTACGAGTACCGTGTCAGGGCGCAGGCGGGAGAGTTCTTCCAGGACTCCACACCTACCGTGGCGGATCGTGAGCTGGACCTGACCGGTGTCTGGATTCACGACCCGGCAGACTCGGCGGTGACCGTACGGCAGTTTGTGTACGGTAAGGACAGCCGATCGCACGCCATCGACACAGCGGCAACGGTGCAACAGTTCGCGGGCCGTACGTTCCCCGTGACGGATTTCGGCGAGTACGAGACCGAGGACATCTCCATCTCCGTGGACATCCCCGGCGGTGACACCCACATGGCCGAGGAAGCTGACCTCCGCGGCTTCATGGAGATGAAGAAGACCCTCTTCCTCCGCGACAACCGGGGCCGTGCCGCTTATGGTACGATGTCTGGGTTTAGCCAGTCGGACGCGTCGTGGGGAGTCACCGTGGGGTTCAAGTTCGGCCGTGTCTCATTCGACATCGAGGAGGTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cb52208c96588fdeff0dee76686f4b066350b2028baf2a47647726af90bf255b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2808
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50