Protein

View in Explore
Genbank accession
XWX34836.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,98
Protein sequence
MTLESNIPIALNSQNRHIMSGNMKEAERRLKLAQYELEKHKTEEENAHNSKQITHGKTSTVEKELKTIRNQVKSQVIGKSDNSAAELKDMRVDTQGQLHELAQDRLKADFEFFGGMAKQAETLAKKHEEQIQNSSYYNEIKTYTGRKFNTTYYITHIPHLDSDGNLIKLKRGIEGTNPDKPEHITPVEFSRRHNATFVSNASTGSGSQLKLHGRQIYNGRIIDSLDTDYVKDRWTLAIAEDNTLTSYPPNINAQTLLSQGVTNALTAFGPIISDNKVIVKDGDYSPNTTVKHPRQVIGQLPNKDLIFFSCDGRENNTSSFIEEGMTLKEVAEVLFDYYGDIRFAYNLDGGGSTSSVLRSTKLNKAQDEDFTADRPVLDFLYVGRDERQIRDLDIQKAYEDIGRVNSRVQDIYGKLYKFNRTSSKEFWLTGFDGYSGFITGDDKGNPMLKLYQGTDYWRFWSYELSRTIFRITPDSLQHNNRELARNYSAPESVTDINSVTFGGTYHVPRDAKGSPYSDSSSIVTHYNVSRADFKDVSTAFQTAIPFARSENYKMKRRTYAQGKWSQWFDV
Physico‐chemical
properties
protein length:570 AA
molecular weight: 64969,47420 Da
isoelectric point:6,96740
aromaticity:0,10175
hydropathy:-0,75544

Domains

Domains [InterPro]
DC_1253
STR
1–568
DC_1253
Coil
Unmapped
23–52
Coil PTHR40446
IPR018711
STR
211–382
IPR018711
XWX34836.1
1 570
Architecture
STR
STR 1-568 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XWX34836.1
1 570
Domain Start End Length (AA) Confidence
N-terminal 1 340 340 0,4265
Central domain 341 539 200 0,1420
C-terminal 540 570 30 0,9859
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-340
Central
341-539
C-terminal
540-570

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage PG-2021_68
[NCBI] 		2815634 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Mammaliicoccus sciuri
[NCBI] 		1296 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XWX34836.1 [NCBI]
Genbank nucleotide accession
MZ417342.1 [NCBI]
CDS location
range 7152 -> 8864
strand -
CDS
ATGACTTTAGAATCAAATATTCCTATAGCTTTAAATAGCCAGAATAGACATATAATGTCTGGTAATATGAAAGAAGCTGAGAGAAGATTAAAACTAGCTCAATATGAACTAGAAAAGCATAAAACAGAAGAAGAAAATGCTCACAATTCTAAACAAATTACACATGGTAAAACAAGCACAGTTGAAAAAGAATTGAAAACTATAAGAAATCAGGTTAAATCGCAGGTAATAGGCAAGTCAGACAATAGTGCAGCAGAACTTAAAGATATGCGTGTTGACACACAAGGTCAACTACATGAACTTGCACAAGACAGACTAAAAGCTGACTTTGAGTTCTTTGGTGGTATGGCTAAACAAGCTGAAACATTAGCAAAGAAACATGAAGAACAAATTCAAAATAGTTCTTATTATAATGAGATTAAGACTTATACTGGTCGTAAGTTTAATACAACTTACTATATAACTCATATTCCACACTTAGATAGTGATGGCAATTTAATAAAACTTAAACGTGGAATAGAAGGTACTAATCCAGATAAACCAGAACATATTACACCAGTTGAATTCTCAAGAAGACATAATGCTACATTTGTATCTAATGCTAGTACAGGTAGTGGTAGTCAACTGAAATTACATGGTCGTCAAATATATAATGGTCGTATTATAGATAGCCTTGATACTGATTATGTTAAAGACAGATGGACTTTAGCAATTGCAGAAGATAATACTTTAACAAGTTACCCTCCTAATATTAATGCTCAAACATTATTATCTCAAGGTGTTACTAATGCTTTAACAGCTTTTGGTCCTATTATATCAGACAATAAGGTTATTGTCAAAGATGGAGATTATAGCCCTAATACGACTGTGAAACACCCAAGACAAGTTATTGGTCAACTACCTAATAAAGACTTAATATTCTTTAGTTGTGATGGTCGTGAGAATAATACAAGTTCATTCATTGAGGAAGGAATGACTCTTAAAGAAGTAGCTGAAGTATTATTTGATTATTATGGAGATATTAGATTTGCATATAATTTAGATGGTGGAGGTTCTACATCTTCTGTGTTACGTTCTACTAAATTAAATAAAGCACAAGATGAAGATTTTACTGCTGATAGACCAGTATTAGACTTCTTGTATGTTGGCAGAGATGAAAGACAAATCAGAGATTTAGATATCCAAAAAGCATATGAAGATATTGGTAGAGTCAACTCAAGAGTGCAAGATATATACGGTAAACTTTATAAGTTCAACAGAACAAGCTCTAAAGAGTTTTGGCTGACTGGTTTTGATGGTTACTCTGGTTTTATTACTGGAGATGACAAAGGAAACCCAATGCTTAAATTATACCAAGGAACTGATTATTGGAGATTCTGGTCTTACGAACTATCACGTACAATATTCAGAATAACTCCAGATTCATTGCAACATAATAACAGAGAACTTGCTAGAAACTATAGTGCTCCAGAATCAGTAACAGATATCAACAGTGTTACGTTCGGTGGAACGTATCATGTACCTAGAGATGCTAAAGGTTCTCCATATTCAGATTCTAGTTCTATTGTTACTCATTACAACGTAAGTAGAGCAGACTTTAAAGATGTTTCAACAGCATTCCAAACTGCCATTCCATTTGCTAGGTCAGAGAACTACAAAATGAAGCGTAGAACTTATGCGCAAGGTAAATGGTCACAGTGGTTTGATGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b6b82e891fee709303131f7f779fb153f5ba201e5e12adf4fdb9ec24ab76938d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8699
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Natural phage communities crosslink different species within the genus Staphylococcus Goller,P.C., Elsener,T., Lorge,D., Radulovic,N., Bernardi,V., Naumann,A., Amri,N., Khatchatourova,E., Hernandes Coutinho,F., Loessner,M.J. and Gomez-Sanz,E. 2024 — GenBank