Protein

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Genbank accession
YP_009007177.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,66
Protein sequence
MPLYTQSIKNLKGGISQQPDILRFQDQGETQINGWSSESDGLQKRPPTVFVKRLAKQRAAPITDVSKFHLINRDATEQYYIVFTGTNILVFDLDGNPYTVSGAMDYVTTSAPRDDIRVITVADYTFIVNRKKVVKEGTTKAHAGYDMKHRALINLRGGQYGRTLTVSINGGPKVEHKTPAGNDAENDPPKVDAQYIGNALRTLLVAAYPDWTFNLGSGYLEIVAPSGTSINSVETTDGYANQLITALIDTVQTISKLPLAAPNGYIIRIQGETNSSADEYYVMYDSSRKTWRETVEPGVTTGFDVTTMPHALVRKSDGNFEFKTLDWSQRGAGNDDTNPMPSFVDSTINDVFFYRNRLGFLSGENVIMSRSAGYFSFFPKSVATLSDDDPIDVAVSHPRISILKYAVPFAEQLLLWSDEVQFVMTSSGVLTSKSIQLEVGSEFAVSDEARPFAIGRSVFFSAPRGSFTSINRYFAVADVSDVKDADDTTGHVLSYIPNGVFDIQGSSTENFIAVTTTGANSRVYIYKFLFKDGVQLQASWSHWEFETGDMIMAAACIGSKMYIVRKHSWGVDLERLEFIKQATDIAGEPYRFHMDGKTVLTIPSDAYNVNANTTTFDMKLGFSDERPSPGRFIMADSTGAYIMLPEQSWDTTTNITIKGDWSGRTVFIGRAYTFTYGFSRFLIKYEDQNGTITEDSGRLQLRRAWVNYQQTGALIMKVKNQYREFLNTLNGYKLGNQNVGEVSIGDGQFRFPMNGDAMNTRLILESAYPTPVSIVGCGWEASYARKAKSI
Physico‐chemical
properties
protein length:790 AA
molecular weight: 87773,61240 Da
isoelectric point:5,65454
aromaticity:0,11266
hydropathy:-0,28633

Domains

Domains [InterPro]
IPR058003
TTP
1–790
IPR058003
YP_009007177.1
1 790
Architecture
TTP
TTP 1-790
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009007177.1
1 790
Domain Start End Length (AA) Confidence
N-terminal 1 132 132 0,9889
Central domain 133 331 200 0,1857
C-terminal 332 790 458 0,2400
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-132
Central
133-331
C-terminal
332-790

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CR44b
[NCBI] 		1455075 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Kayfunavirus
Host Citrobacter rodentium
[NCBI] 		67825 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009007177.1 [NCBI]
Genbank nucleotide accession
NC_023576 [NCBI]
CDS location
range 22287 -> 24659
strand +
CDS
ATGCCACTTTATACACAATCCATTAAGAATCTGAAGGGTGGCATTAGCCAGCAGCCTGACATCCTCAGGTTCCAAGACCAAGGTGAGACCCAGATTAACGGATGGTCCTCTGAGAGTGATGGACTCCAGAAGCGCCCACCAACAGTATTCGTTAAGCGTCTCGCCAAGCAACGAGCAGCGCCAATAACTGACGTCTCAAAGTTCCACCTGATTAACCGTGATGCGACCGAGCAGTATTACATCGTGTTCACCGGGACGAACATTCTGGTCTTTGACCTTGATGGGAACCCTTACACGGTGTCCGGGGCAATGGATTACGTTACAACCTCAGCGCCACGAGATGACATCCGTGTCATTACAGTAGCTGACTACACGTTCATTGTGAACCGTAAGAAGGTTGTCAAGGAGGGAACCACTAAGGCACACGCGGGATATGACATGAAGCACCGTGCGCTGATTAACCTACGTGGTGGACAGTATGGTCGAACACTGACGGTCTCAATCAACGGTGGTCCAAAGGTTGAGCACAAGACTCCAGCTGGAAACGATGCCGAGAATGACCCTCCAAAGGTCGACGCTCAGTATATTGGTAACGCACTACGTACCCTTCTGGTCGCTGCTTATCCAGATTGGACGTTCAACCTTGGGTCTGGATACCTTGAGATTGTAGCACCTAGTGGGACCAGCATTAACTCAGTGGAGACGACAGACGGTTATGCCAACCAGTTAATCACAGCGTTGATTGACACCGTGCAGACTATCAGTAAGCTACCGCTTGCAGCGCCTAATGGTTATATCATCCGCATCCAAGGTGAGACCAACAGTAGCGCTGATGAGTATTACGTGATGTATGACTCTTCGCGTAAGACTTGGCGCGAGACTGTGGAGCCGGGCGTGACTACTGGTTTCGACGTGACGACGATGCCTCATGCTCTAGTTCGTAAGTCAGATGGTAACTTTGAGTTCAAGACTCTTGACTGGTCACAGCGTGGAGCTGGTAACGATGACACCAACCCGATGCCCTCCTTCGTGGACTCAACCATCAATGATGTGTTCTTCTACCGTAACCGCTTAGGGTTCCTGTCTGGCGAGAACGTAATTATGTCCCGGTCTGCTGGATACTTTTCGTTCTTCCCTAAGAGCGTGGCGACTCTAAGTGATGATGATCCAATTGATGTGGCTGTGAGTCACCCTAGAATCTCAATCCTGAAGTATGCCGTTCCGTTCGCTGAACAGTTACTCCTGTGGTCTGACGAGGTTCAATTCGTGATGACCAGCTCTGGTGTCCTGACCTCTAAGTCTATCCAGCTTGAAGTTGGCTCTGAGTTCGCTGTGTCTGATGAGGCCAGACCGTTTGCTATTGGACGTTCAGTCTTCTTCTCAGCGCCACGTGGCTCGTTCACCAGCATTAACCGTTACTTTGCGGTAGCTGACGTCTCTGACGTTAAGGATGCGGACGACACAACTGGTCACGTTCTGTCATACATTCCAAACGGAGTGTTTGACATCCAAGGGTCCTCTACCGAGAATTTCATCGCGGTAACTACCACTGGCGCGAATAGCAGGGTGTACATCTACAAGTTCCTGTTCAAAGATGGCGTCCAGTTGCAAGCCTCTTGGTCGCACTGGGAGTTTGAGACTGGTGACATGATTATGGCAGCTGCCTGTATCGGGTCCAAGATGTATATCGTCCGTAAGCACTCGTGGGGTGTGGACTTGGAGCGACTGGAGTTCATCAAGCAGGCTACTGACATCGCTGGAGAGCCTTACCGATTCCACATGGATGGAAAGACAGTCCTGACCATTCCGTCTGATGCCTACAATGTCAACGCGAACACCACAACGTTCGACATGAAGCTAGGCTTCTCAGACGAGCGGCCTTCACCGGGTAGATTCATCATGGCTGACTCCACTGGCGCTTACATTATGCTGCCTGAGCAGAGCTGGGACACTACGACCAACATTACAATCAAAGGAGACTGGTCAGGGCGTACAGTCTTCATTGGTCGAGCCTACACGTTCACCTATGGTTTCTCACGGTTCCTCATTAAGTATGAGGACCAGAACGGTACTATCACGGAGGACAGTGGTCGCTTGCAGTTACGCCGAGCTTGGGTGAACTACCAGCAGACCGGGGCGCTAATCATGAAGGTTAAGAACCAGTACAGAGAGTTCCTCAACACGCTGAACGGATACAAGCTGGGGAATCAGAATGTCGGAGAGGTGAGTATCGGTGACGGTCAGTTCCGCTTCCCGATGAACGGAGACGCAATGAACACAAGGTTAATACTTGAGTCAGCATATCCTACTCCAGTGTCCATCGTTGGTTGCGGCTGGGAGGCTTCATATGCCCGTAAAGCCAAATCTATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8090a109126a51ba76f9337086d6ebe00832bee99319689ff41e1f2ea2286728
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9007
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of Citrobacter rodentium bacteriophages and their in vivo assessment as antimicrobial agents Toribio,A.L. 2010 — GenBank