Protein

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Genbank accession
AFM73722.1 [GenBank]
Protein name
pre neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MKLDNLITKLHSYFSQKFVSQLENNFEQIKYWTNKSDDSFNEHLTTQKNAHTTDQIKHKTTKGKDVVLSNHENYQDELIEHLVLGHNGDGIQELRASHTSMDAQSFDSLHQRLYHDFLRESNAREELRADLTKKIQRIVNVDDFGGDPTGQKDSTKAFQDALGNGNVQVTMSGGTYLTTGIKMPNNSRLVGQGKDITTIKLMDKTPAENIGITNLKMSGGAENISLESFSFNGNKFRQNKTLKATGGSRSSNIRFAGVTNGYIYNVKSYDALLHCIDVTYANDNYYYEGDGNRVPYALESKHIHIDNCEAYGCGDDGITTHHSRYITISNCYAHTPTGGSNNNGIEIDDGSQYVFLSNNRTKGNFGGLEIKAHSNTSAASGVFVNGHVSIEDTRAYNIRHIGHHRAKTDNKSLTAYDVVLNNCLALNPKYNGVYPGSTPRALLISAYRNVSVNNFTAIGDSDFGKLEGGKLDKKQPAIAIQFMSENISLNNINVRNFKNAEVDIRLFGGDNRPSRVSLNNINIWNSSNNIGIGVGSKIYDTKITNCNLHGNGSGIGLRLTNNHAMISGVTADNYSTSAWIAGEKYDTPPTVGKGGASIASTGSAGVANASAVIASTGGSKAYSNRSFVLGSGANSKSYGSRSGIINSLNSETDKKGHTQLIMNSNRVKSPGNYHVVAGYGSSGNASTSNIKFDLSSYSGNLTLAGQLKQDSADIAELFESQNGLAIDLGTIVTLDGDKIIKAQPNDTPIGVISGTAALVANEKTFHHKDRFLKNEYGVTITNRKQVEFVDDEGNVSFEWRDIPVENPEYNDKIDYQSRSERPEWNVVGLLGQIYTNIEKDVIPGDYINGRAGVGYKDNVNGKGRVMKITSEYTEERGCAIALVLWGAK
Physico‐chemical
properties
protein length:888 AA
molecular weight: 96874,13310 Da
isoelectric point:6,84008
aromaticity:0,07883
hydropathy:-0,54685

Domains

Domains [InterPro]
DC_0125
ATT
1–265
DC_0125 IPR039448 IPR006626 IPR006626 IPR021865
IPR012334
STR
122–592
IPR012334 G3DSA:2.40.300.10
IPR011050
STR
133–526
IPR011050 G3DSA:4.10.80.40
IPR006626
Unmapped
258–280
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
DC_0616
STR
368–659
DC_0616
AFM73722.1
1 888
Architecture
ATT
STR
CHP
RBD
ATT 1-265 | STR 266-659 | CHP 660-712 | RBD 713-884 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFM73722.1
1 888
Domain Start End Length (AA) Confidence
N-terminal 1 153 153 0,9937
Central domain 154 615 463 0,9775
C-terminal 616 888 272 0,8309
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-153
Central
154-615
C-terminal
616-888

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SepiS-phiIPLA5
[NCBI] 		2922988 Uroviricota > Caudoviricetes > Rockefellervirus >
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFM73722.1 [NCBI]
Genbank nucleotide accession
JN192400 [NCBI]
CDS location
range 15343 -> 18009
strand +
CDS
TTGAAATTAGATAACTTAATTACGAAACTTCACTCGTACTTTAGTCAAAAGTTTGTAAGTCAACTTGAGAATAACTTCGAACAAATAAAATACTGGACTAATAAAAGTGATGATAGCTTTAACGAGCATTTAACCACTCAAAAAAATGCGCATACAACTGATCAAATCAAACACAAAACTACAAAAGGTAAAGATGTTGTATTATCTAATCATGAAAATTATCAAGATGAACTTATTGAACATCTTGTGTTAGGACATAATGGAGATGGAATACAAGAATTAAGAGCAAGTCACACATCAATGGACGCTCAAAGTTTCGATTCTTTACACCAACGTCTATATCACGACTTTTTAAGAGAAAGTAACGCTAGAGAAGAACTAAGAGCCGACTTAACCAAGAAAATACAACGTATTGTTAATGTTGATGATTTCGGAGGAGATCCAACAGGACAAAAAGACAGTACAAAGGCATTTCAAGACGCATTAGGTAACGGCAATGTACAGGTAACTATGAGTGGCGGTACTTACCTTACAACAGGTATTAAAATGCCTAACAACTCTCGTTTGGTAGGACAAGGTAAAGACATTACTACTATTAAGCTAATGGATAAAACACCAGCAGAGAACATAGGTATCACTAACTTAAAAATGAGTGGCGGAGCTGAAAACATTTCTTTAGAAAGTTTTTCGTTCAATGGGAATAAGTTTAGACAAAATAAAACACTTAAAGCTACCGGTGGCTCTCGTTCATCTAACATTAGATTTGCGGGTGTAACTAATGGATATATCTATAACGTTAAATCATATGACGCTTTACTACACTGTATCGATGTAACATATGCAAATGACAATTATTACTACGAAGGCGATGGAAACAGAGTGCCTTACGCATTAGAAAGTAAGCATATTCATATTGATAATTGTGAGGCATATGGTTGCGGAGATGATGGTATCACTACCCATCACTCTCGTTACATTACAATTTCTAATTGTTATGCACATACACCAACAGGTGGAAGTAATAACAATGGTATAGAAATTGACGATGGCTCACAATATGTGTTCTTATCAAACAACAGAACCAAAGGTAACTTCGGTGGTTTAGAAATCAAAGCACACAGTAACACAAGTGCTGCAAGTGGCGTATTCGTTAACGGTCACGTATCAATCGAAGATACAAGAGCTTACAACATTCGACACATCGGTCATCATAGAGCTAAAACGGACAATAAAAGTTTGACTGCTTATGACGTGGTGCTAAATAATTGCTTAGCTTTAAACCCTAAATACAATGGTGTGTATCCAGGCTCAACACCTAGAGCATTATTAATCAGTGCTTATAGAAATGTTTCTGTAAATAACTTTACAGCTATAGGTGATAGTGATTTCGGAAAATTAGAAGGTGGAAAACTAGATAAAAAACAACCAGCAATAGCCATCCAATTCATGTCCGAAAACATCTCGCTTAATAATATTAATGTGCGTAACTTTAAAAATGCAGAAGTAGATATTAGATTATTTGGCGGAGATAATAGACCGTCTAGAGTATCACTAAATAACATAAATATTTGGAATTCATCTAACAATATCGGTATCGGTGTTGGAAGTAAAATATACGACACTAAAATAACTAATTGTAACTTACACGGCAATGGTTCAGGTATAGGATTACGTTTGACAAATAACCACGCTATGATTAGCGGCGTCACAGCTGATAATTATTCAACTTCTGCATGGATAGCAGGAGAAAAGTACGACACACCACCTACAGTAGGAAAAGGCGGCGCTAGTATAGCGTCTACAGGAAGTGCTGGTGTAGCAAACGCTAGTGCAGTTATTGCATCTACAGGTGGTTCGAAAGCATACAGTAATCGTAGCTTTGTATTAGGTTCTGGTGCTAACTCCAAATCTTATGGTTCACGTAGCGGTATTATCAATTCACTTAATTCTGAAACTGATAAAAAAGGCCATACACAACTGATTATGAATAGTAATCGTGTTAAGTCACCTGGTAACTATCATGTTGTCGCTGGATATGGTTCTAGTGGTAATGCTTCTACATCTAACATTAAATTTGATTTAAGCTCTTATTCAGGAAACTTAACTTTAGCCGGTCAACTTAAACAAGATAGTGCCGATATCGCAGAGTTATTTGAGTCACAAAATGGATTAGCAATCGATTTAGGAACTATCGTTACATTAGACGGCGATAAGATAATAAAAGCGCAACCTAATGACACACCAATTGGCGTTATATCTGGAACTGCCGCGTTGGTAGCGAACGAAAAAACGTTCCACCACAAAGATAGATTTCTTAAAAACGAATATGGTGTGACTATCACGAATAGAAAACAAGTTGAATTTGTAGATGATGAGGGCAACGTTTCTTTCGAATGGCGTGACATACCAGTAGAAAACCCTGAATATAACGACAAAATCGATTATCAATCACGTTCAGAAAGACCTGAATGGAATGTAGTCGGATTATTAGGTCAAATCTACACAAACATTGAGAAAGACGTTATACCAGGCGACTATATCAACGGTAGAGCAGGTGTAGGATATAAAGATAATGTGAATGGTAAAGGCAGAGTCATGAAGATAACTTCTGAATACACTGAAGAACGTGGCTGTGCAATAGCATTAGTATTGTGGGGTGCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c3d079a702d3dae67b82dadaaba4d70abe9eba3483938ddc58a0729453284f2c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7803
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of bacteriophages infecting Staphylococcus epidermidis Gutierrez,D., Martinez,B., Rodriguez,A. and Garcia,P. 2010 20449591 GenBank
Genomic characterization of two Staphylococcus epidermidis bacteriophages with anti-biofilm potential Gutierrez,D., Martinez,B., Rodriguez,A. and Garcia,P. 2012 22681775 GenBank