Protein

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Genbank accession
ALA46506.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAFDGAIKSLMQGVSQQVPRERLDGQVSVQLNRLSDVVNGNRRRPGARYLTTLATTSQYDNRLFATYVDVGDAANHVIVNTETGQLLVLSEDFSTVLYNGTQTYLKASSGNSIQTATLRGDLYLANTEKKPTTAHDVTAQKDPTKTGFYFVRVPAFSKDYDITLSNSVGTYTYTYRTPNGQGTSDADLAKPPYIISQLQASINAQTGTHGITATVYDAYMYLSSNTATLSVTTNAGATYATGSNQSRVALTSDLPARLPNAADGVLCAVGTTPRTFTWYEYEASTAVWKEAGAYGSPTGFQNMPIKLSLDGTYTMSIPVYEGRLAGSDETNEDPGFIEHGLTGFGAYQGRLVILAGPEVCMSAAGKPERWYRSTVTALLTDDPINIFSGAATTTNFSHCTQFNKDLLLFSRSCQAVVPSSNAAITPQTAQIVITSQYTTDTLAAPTVVGRSVLYPMPRTESFAGILEMIPSNTTDSQYTSNDVTAHIPRYIPGSIRSITASTTSNSSVFLCTGDNMSVFIQDYLWSGDEKVQSAWHQWSVPYPIVCAWFVRDRVYLGMRNGTSIVVGTVESQAGTTYLTYVRPFTDLYSLVQVSSRTFTLPVHLRNAYSADAELMLNFADGSMGGMWAGVESVNTDTWKVTTVRNVPDGNYFIGLRYLSVLSPTPPLVRDSNGVVIGTSRSLLVRYELTLKDSGEFHAVITDSSRTLTDGTYSSLVYSSVELMPNAPTDASLGRAIIPVRAQAQDTVATFESDTDTDLCILDIEYVLQYRARRQRI
Physico‐chemical
properties
protein length:776 AA
molecular weight: 84466,50280 Da
isoelectric point:5,28650
aromaticity:0,09536
hydropathy:-0,15979

Domains

Domains [InterPro]
DC_0058
STR
1–776
DC_0058
IPR058003
TTP
5–776
IPR058003
ALA46506.1
1 776
Architecture
STR
STR 1-776
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ALA46506.1
1 776
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9602
Central domain 139 339 202 0,1952
C-terminal 340 776 436 0,2034
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-339
C-terminal
340-776

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage BF25/12
[NCBI] 		1698708 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Dickeya sp. B16
[NCBI] 		1778540 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALA46506.1 [NCBI]
Genbank nucleotide accession
KT240186 [NCBI]
CDS location
range 37569 -> 39899
strand +
CDS
ATGGCGTTCGATGGCGCGATTAAGAGCTTAATGCAGGGCGTTAGCCAGCAGGTTCCGCGTGAACGCCTGGATGGACAAGTCTCTGTACAGCTGAACAGATTATCAGACGTGGTGAATGGAAACCGTAGACGCCCAGGCGCACGGTACCTGACAACGCTCGCAACCACTTCCCAGTATGACAATCGCTTGTTTGCGACGTACGTGGATGTTGGGGACGCTGCGAACCACGTAATTGTGAATACCGAAACTGGGCAGCTCCTGGTTCTCTCCGAGGACTTCAGCACTGTCCTGTACAACGGGACGCAGACGTACTTGAAGGCCAGCTCCGGTAACTCTATCCAGACAGCAACCCTACGTGGGGACCTGTATCTGGCGAACACTGAGAAGAAGCCTACGACTGCACACGACGTTACTGCACAGAAGGACCCTACTAAGACCGGATTCTATTTTGTGCGGGTCCCTGCGTTCAGTAAGGACTATGATATCACCTTGTCTAACTCGGTAGGTACATACACCTATACGTACCGTACTCCGAACGGACAAGGCACAAGTGACGCTGACTTAGCTAAACCGCCCTACATCATCTCGCAGCTCCAGGCCTCCATCAATGCGCAGACAGGCACCCACGGCATCACTGCTACGGTGTATGACGCGTACATGTACCTGAGCAGCAACACAGCAACACTGTCTGTTACCACAAATGCTGGGGCAACATACGCTACCGGTAGTAACCAGTCACGCGTAGCACTCACCAGCGACCTCCCAGCGCGTTTACCAAACGCAGCTGATGGTGTACTATGTGCTGTGGGTACAACCCCACGTACGTTTACCTGGTATGAGTATGAGGCATCTACAGCTGTGTGGAAAGAGGCAGGCGCTTACGGCAGTCCTACGGGATTCCAGAACATGCCTATTAAGCTTTCCCTGGACGGCACATACACCATGAGTATTCCTGTGTATGAGGGCCGCCTTGCTGGTTCAGACGAGACGAATGAGGATCCTGGGTTCATTGAGCACGGGTTGACTGGCTTTGGTGCATACCAGGGCCGCTTAGTCATCCTGGCTGGCCCCGAGGTGTGTATGAGTGCGGCTGGTAAGCCTGAGCGCTGGTACCGTAGTACGGTGACGGCACTGCTTACGGATGACCCGATTAACATCTTCTCTGGTGCGGCTACCACTACGAACTTCAGCCACTGCACGCAGTTCAACAAAGACCTGCTGCTGTTCTCTCGTTCGTGCCAGGCGGTAGTGCCCAGCAGCAACGCGGCTATTACTCCGCAGACTGCTCAGATTGTGATTACCTCCCAGTACACCACAGATACTCTGGCTGCACCTACGGTGGTCGGACGCTCAGTGTTGTACCCGATGCCTCGTACTGAATCCTTCGCGGGTATCCTGGAGATGATTCCAAGTAACACCACGGACTCTCAGTACACGTCAAACGATGTAACGGCGCACATCCCGCGGTATATCCCAGGGAGTATCCGTAGCATCACGGCTAGTACCACCTCGAACTCCAGCGTGTTTCTATGCACTGGGGATAACATGAGCGTGTTCATTCAGGACTACTTGTGGTCTGGTGATGAGAAGGTACAGTCGGCGTGGCACCAGTGGTCAGTACCCTATCCTATCGTGTGTGCATGGTTCGTTCGTGACCGTGTGTACCTGGGTATGCGTAACGGGACAAGTATCGTTGTAGGTACAGTGGAATCACAGGCTGGCACAACGTACCTAACTTATGTACGTCCGTTCACGGACTTGTACAGCCTGGTGCAGGTTAGCTCGCGTACGTTCACACTCCCAGTACACCTCCGTAATGCGTACTCCGCAGATGCCGAGCTGATGTTGAACTTTGCTGATGGCAGCATGGGTGGTATGTGGGCCGGTGTCGAATCTGTGAATACAGACACTTGGAAAGTAACCACTGTGCGGAACGTCCCGGACGGGAACTACTTCATAGGATTACGCTACCTATCTGTGCTCTCGCCGACTCCACCCCTGGTACGTGACTCCAATGGCGTCGTTATTGGTACGAGCCGCTCCCTGTTAGTGCGTTATGAACTGACCCTGAAAGATTCTGGTGAATTCCACGCGGTCATCACAGACAGCTCACGCACGCTTACTGATGGCACATACTCCAGCCTGGTGTATTCCAGTGTAGAACTCATGCCTAATGCGCCTACGGATGCATCCCTGGGTCGTGCTATTATCCCGGTACGCGCCCAGGCACAGGACACAGTAGCCACCTTTGAGTCGGATACTGATACAGACCTATGCATCTTGGACATTGAGTACGTCTTGCAGTACAGAGCAAGGAGACAAAGAATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c28acb3d0eb09fbe4caaf59102a09fd9a3e88fb8b54b3353315ee399fe2ed48d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8681
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bateriophages against Dickeya spp. of Phalaenopsis orchids Dreo,T., Naglic,T., Alic,S., Peterka,M. and Ravnikar,M. 2015-10-29 — GenBank