Protein

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Genbank accession
YP_009597513.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MPDRIIQVLSADYDRVVLTEVEFEDGTRRFIYGTSLGVGAKAYNAYFSNTVGSQVSAGTMASMKTNVCASADLHMDISFYFEETPGTINEKLRDGTGCMYTWGVNSEWGDRGPGPPVGAPIPPNFQTIIKAGWVLYRGAFSGNIAGSVSQPNRPLTIGADAMRHPWMRTTGVNSICLRGETLNRNMYGHMGPRYGMGSNPVGGPYAHNIQTESYQEIQYKAGFFRGPPNSFMGWENTDNNNAGSGWGNNAIYRDNNFRVPKRVRWYITNMKYNGQGFYAEDVFGSRNQEIKISPREFIVNGINLMNTGWKFINQNDINYSPGNRPDIRVIATNVARFSGNPTVGNNGYVHFNQPLTRPDNGAEFGQGNISEMHVTTVGVYNFRSDAQWYVKSNPPEIGNQWGPVWSESTRPLRLVGGTGSADIGGNLRTSGNASHHLATLWLGVNNSRNGACVVTLDWKNDEWIAAAGIGCYNPLEDLTQWSEVDSRLRIFGNHFQKRVHQIMCLPVNMCVPFHFIRGTVTQCGVIPGNNAMQMKAMWAPATTNSATQGDYAIIYWLIARADGSVEVWVNVEMSNIMNMRVILPEVRIAVQRLA
Physico‐chemical
properties
protein length:594 AA
molecular weight: 65889,41600 Da
isoelectric point:8,31405
aromaticity:0,10774
hydropathy:-0,36684

Domains

Domains [InterPro]
IPR059609
RBD
1–594
IPR059609
YP_009597513.1
1 594
Architecture
RBD
RBD 1-594
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009597513.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 44 44 0,0094
Central domain 45 243 200 0,2145
C-terminal 244 594 350 0,9263
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-44
Central
45-243
C-terminal
244-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage vB_Kpn_IME260
[NCBI] 		1912318 Uroviricota > Caudoviricetes > Demerecviridae > Sugarlandvirus IME260 >
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009597513.1 [NCBI]
Genbank nucleotide accession
NC_041899 [NCBI]
CDS location
range 109900 -> 111684
strand -
CDS
ATGCCCGATAGGATTATTCAGGTACTGTCCGCAGACTACGACAGAGTTGTCTTAACTGAAGTTGAGTTTGAGGATGGTACTAGACGTTTCATTTACGGTACTTCTCTAGGCGTTGGCGCTAAAGCGTATAATGCTTACTTTAGTAATACTGTCGGTTCCCAGGTTTCTGCAGGTACTATGGCTAGTATGAAAACTAACGTTTGTGCTTCTGCTGATCTTCATATGGATATTAGCTTCTATTTCGAAGAGACGCCAGGTACTATTAACGAGAAGCTACGAGATGGTACTGGGTGTATGTACACCTGGGGCGTTAACTCAGAATGGGGAGACAGGGGGCCTGGGCCGCCGGTTGGAGCTCCTATACCTCCTAACTTTCAAACAATTATTAAAGCCGGTTGGGTACTCTATAGGGGGGCTTTTAGTGGCAATATAGCCGGTTCTGTGTCTCAGCCCAATAGACCACTTACTATTGGTGCTGATGCTATGCGCCACCCATGGATGCGTACCACAGGAGTTAATAGTATATGTTTGCGTGGTGAGACTCTCAACCGTAATATGTACGGACATATGGGGCCTAGATATGGTATGGGGTCTAATCCCGTTGGTGGTCCTTATGCTCATAACATCCAGACTGAGTCTTATCAGGAGATTCAATATAAGGCGGGTTTCTTCCGCGGTCCTCCTAATAGCTTTATGGGCTGGGAAAATACTGATAATAATAATGCTGGTAGTGGTTGGGGTAACAATGCTATTTATAGGGATAACAACTTCCGTGTTCCTAAGCGTGTTCGCTGGTATATTACTAACATGAAATACAATGGGCAGGGGTTCTACGCAGAGGACGTATTTGGCTCTCGCAACCAGGAGATTAAAATCAGCCCTAGAGAGTTCATTGTAAACGGTATAAACCTAATGAATACCGGGTGGAAGTTTATAAACCAGAACGATATAAACTACAGCCCAGGCAATAGACCGGATATCCGGGTTATTGCGACCAATGTTGCTAGATTTAGTGGCAACCCTACTGTTGGTAATAATGGATATGTTCACTTTAATCAGCCTCTAACTCGACCAGATAATGGTGCGGAATTTGGGCAAGGTAACATAAGTGAGATGCACGTAACCACTGTAGGAGTTTACAATTTTAGATCTGATGCGCAGTGGTATGTAAAATCTAACCCACCGGAAATCGGAAACCAGTGGGGTCCAGTATGGTCTGAATCAACTCGACCTCTCCGCCTAGTAGGGGGTACCGGCTCTGCTGATATTGGAGGGAACCTACGTACTAGCGGTAATGCTAGTCACCACCTGGCTACCTTGTGGTTAGGGGTTAATAACTCCCGAAATGGGGCTTGCGTCGTCACTCTAGACTGGAAAAACGATGAGTGGATTGCTGCTGCAGGGATTGGATGTTATAACCCTCTAGAAGATCTTACCCAGTGGAGCGAGGTAGATAGTAGGCTGAGAATTTTCGGAAATCACTTCCAGAAACGTGTGCATCAAATCATGTGTCTTCCAGTTAACATGTGTGTGCCGTTCCACTTTATACGCGGGACCGTAACCCAGTGTGGGGTTATTCCCGGGAACAACGCCATGCAAATGAAGGCTATGTGGGCGCCTGCTACTACCAACTCTGCCACTCAGGGCGATTATGCCATTATCTATTGGCTGATAGCTAGGGCTGACGGTAGTGTTGAAGTTTGGGTTAACGTTGAGATGAGCAATATCATGAATATGCGAGTGATTCTTCCTGAGGTTAGGATTGCTGTGCAAAGGCTTGCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a8e497d84ba80aa11b1b007f1ae9e369036e98b038168051efc084c0cfac68e4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2447
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of two Novel Multi-drug resistant Klebsiella pneumoniae Phage vB_Kpn_IME260 Xing,S., Pan,X., Sun,Q., Pei,G., Mi,Z., An,X. and Tong,Y. 2017-05-11 — GenBank