Protein

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Genbank accession
YP_009848742.1 [GenBank]
Protein name
straight fibre tail protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MISNNAPAKMVLNSVLTGYTLAYIQHSIYSDYDVIGRSFWLKEGSNVTRRDFTGVDTFSVTINNLKPTTTYEVQGAFYDSIIDSELLNAQIGINLSDKQTFKMKSAPRITGARCESEPVDVGVGAPIVYIDTTGEADYCTIELKNNSNANNPWVKYYVGALMPTIMFGGVPIGSYKVRISGQISLPDGVTIDSSGYYEYPTVFEVRYNFVPPTAPVNIAFKAARIADGKERYDLRVQWDWNRGAGANVREFVVSYIDSAEFARTGWTKAQKINVGAAQSATIISFPWKVEHKFKVSSIAWGPDAQDVTDSAVQTFILNESTPLDNSFVNETGIEVNYAYIKGKIKDGSTWKQTFLIDAATGAINIGLLDAEGKAPISFDPIKKIVNVDGSVITKTINAANFVMTNLTGQDNPAIYTQGKTWGDTKSGIWMGMDNATAKPKLDIGNATQYIRYDGDTLRISSGVVIGTPNGDIDIETGIQGKQTVFIYILDTSLPAKPTSPAYPPSGWSKTPPNRTSNTQNIYCSTGTLDPVTNQLVSGTSWSDVVQWSGTEGVDGRPGADGKPGADGRPGDTGQRGPGMYSLAIANLTAWNDSQANSFFTSNFGTGPVKYDVLTEYKSGAPGTAFTRQWNGSAWTSPAMVLHGDMIVNGTVTASKIVANNAFLSQIGVNIIYDRAAALSSNPEGSYKMKIDLQNGYIHIR
Physico‐chemical
properties
protein length:700 AA
molecular weight: 75807,11420 Da
isoelectric point:5,41945
aromaticity:0,10143
hydropathy:-0,24314

Domains

Domains [InterPro]
IPR057550
STR
10–97
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
104–196
IPR057551
YP_009848742.1
1 700
Architecture
STR
STR
STR
STR
STR 10-97 | STR 103-197 | STR 211-335 | STR 350-679 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009848742.1
1 700
Domain Start End Length (AA) Confidence
N-terminal 1 409 409 0,8546
Central domain 410 665 257 0,1629
C-terminal 666 700 34 0,9067
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-409
Central
410-665
C-terminal
666-700

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SE11
[NCBI] 		2592195 Uroviricota > Caudoviricetes > Demerecviridae > Tequintavirus > Tequintavirus SE11
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009848742.1 [NCBI]
Genbank nucleotide accession
NC_048786 [NCBI]
CDS location
range 89266 -> 91368
strand +
CDS
ATGATTTCAAATAATGCACCAGCTAAAATGGTCCTAAATAGCGTCTTAACTGGATATACGTTGGCGTATATCCAGCATTCTATCTACTCTGATTATGACGTTATAGGCAGGTCTTTTTGGCTTAAAGAAGGCAGCAACGTTACTCGTAGAGATTTTACTGGGGTTGATACCTTCTCTGTAACTATTAATAACCTAAAACCTACAACAACTTATGAAGTTCAGGGTGCATTTTATGATTCTATAATAGACTCTGAACTACTTAATGCTCAGATAGGTATTAATCTATCTGACAAACAAACTTTTAAAATGAAGTCAGCACCTAGAATTACAGGTGCTAGATGTGAATCAGAGCCTGTAGACGTAGGTGTTGGAGCGCCAATAGTTTATATAGATACTACAGGAGAAGCTGATTATTGTACTATAGAATTAAAAAATAATTCTAATGCTAATAATCCGTGGGTTAAATATTATGTTGGTGCGTTGATGCCAACTATTATGTTTGGTGGTGTGCCAATCGGATCCTATAAGGTAAGAATTTCTGGACAAATATCCCTACCAGATGGGGTAACTATTGATTCATCTGGATACTATGAGTATCCTACTGTCTTTGAAGTTAGATATAACTTTGTACCTCCTACAGCTCCTGTTAATATTGCGTTTAAAGCTGCGCGTATAGCAGACGGTAAAGAACGCTATGATTTACGTGTGCAATGGGATTGGAATAGGGGTGCAGGTGCCAACGTTCGTGAATTCGTTGTCTCTTATATAGATTCAGCAGAATTTGCAAGAACTGGATGGACTAAAGCACAAAAAATCAACGTGGGGGCTGCTCAGTCGGCAACAATTATATCATTCCCATGGAAAGTAGAGCATAAATTTAAAGTGTCATCTATTGCCTGGGGACCAGATGCTCAAGATGTTACTGATTCCGCAGTACAGACATTTATACTAAATGAGAGTACACCGTTAGATAATAGTTTTGTTAATGAGACCGGTATCGAAGTAAACTACGCATACATCAAGGGTAAGATTAAAGATGGATCTACCTGGAAACAAACCTTTCTAATAGACGCTGCCACCGGTGCAATTAACATTGGACTTCTAGATGCCGAAGGAAAAGCACCAATATCTTTTGACCCTATTAAAAAGATAGTTAACGTTGATGGAAGTGTAATAACCAAAACCATTAATGCTGCGAACTTTGTCATGACTAATTTGACTGGTCAAGACAACCCTGCAATCTATACTCAAGGTAAAACTTGGGGAGATACAAAATCTGGTATTTGGATGGGCATGGATAATGCTACTGCAAAGCCAAAATTGGACATTGGTAACGCTACACAGTACATTCGTTATGATGGTGATACATTAAGAATCTCTAGTGGGGTTGTAATTGGCACACCTAACGGTGACATAGATATAGAGACAGGTATACAAGGTAAGCAAACAGTATTTATTTATATTCTAGATACTTCATTACCTGCTAAACCAACAAGCCCTGCATATCCACCTTCTGGTTGGTCTAAAACTCCACCGAATAGAACATCTAATACTCAGAATATTTACTGCTCTACTGGTACTCTAGACCCTGTTACTAACCAATTAGTATCAGGAACCAGTTGGTCAGATGTAGTTCAATGGAGTGGTACTGAAGGTGTTGATGGTAGACCCGGGGCAGATGGTAAGCCAGGTGCCGATGGTAGACCAGGAGATACAGGACAACGTGGTCCTGGAATGTATTCTCTTGCTATTGCGAATCTAACAGCATGGAATGATTCTCAGGCTAATTCGTTTTTTACATCTAACTTTGGTACTGGTCCTGTTAAATATGATGTATTAACTGAGTATAAAAGTGGGGCACCGGGAACAGCGTTTACTAGGCAGTGGAATGGTTCAGCATGGACTAGCCCTGCAATGGTTTTACACGGTGATATGATAGTTAATGGTACGGTAACTGCTAGTAAAATTGTTGCTAACAATGCTTTCTTATCACAAATTGGTGTAAATATTATATATGATCGTGCAGCAGCACTATCCTCTAACCCAGAGGGATCTTACAAAATGAAGATAGACCTGCAAAACGGGTATATCCATATAAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dfd9a9a2a824a7fa5f5f767cd0da0802bf3e4ea1bc99878b52db131cdd513605
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7960
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Salmonella bacteriophage diversity and host specificity revealed by physiological characterization and whole genome sequencing Fong,K., Tremblay,D., Delaquis,P., Moineau,S., Goodridge,L., Levesque,R. and Wang,S. 2019-09-14 — GenBank