Protein

View in Explore
Genbank accession
XAG93798.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MADTIDLDGEKFVSPSFVTSATSLDDIYTAWVADFQGSTTAYNPSWRRTDDSATLLPIPPLWTGGADRLVVSTECGVEIVPYQFTSASTHYSQAIAGVSRYYSINCGLRLAIIFHPTGVDSGITSFSGNYNADLALFRGTHNRSSENVQFVARVVPGRQIDVAIKNTAQTAGLPIKLVVLNGTTVVSSTDLTTIVQGGVTLVTCSIYGGTVSGTVVDQAGQPATRIVHVHERETGSVIGRGRSDSSGLFEIPVIAKVGTTMYVVGLDDENSPLINAVIADRIVLE
Physico‐chemical
properties
protein length:285 AA
molecular weight: 30248,62330 Da
isoelectric point:4,96354
aromaticity:0,07368
hydropathy:0,13754

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAG93798.1
1 285
Domain Start End Length (AA) Confidence
N-terminal 1 20 20 0,7392
Central domain 21 219 200 0,4354
C-terminal 220 285 65 0,4404
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-20
Central
21-219
C-terminal
220-285

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeP-F1Pa
[NCBI] 		3143136 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAG93798.1 [NCBI]
Genbank nucleotide accession
PP735386.1 [NCBI]
CDS location
range 33620 -> 34477
strand -
CDS
ATGGCCGACACCATCGACCTGGACGGCGAAAAATTCGTCTCTCCATCATTCGTCACCAGTGCGACATCGCTCGACGACATCTATACCGCCTGGGTGGCCGACTTCCAAGGCTCAACGACTGCCTATAACCCTAGCTGGCGTCGCACCGATGATAGTGCGACGCTGCTACCAATCCCGCCGTTGTGGACCGGCGGGGCCGATAGGTTGGTTGTTTCAACCGAGTGCGGTGTGGAGATTGTCCCCTACCAGTTCACCTCGGCCAGTACGCACTACTCACAGGCGATCGCAGGAGTTAGCCGGTACTACTCGATCAACTGCGGGCTGCGCCTGGCGATTATCTTCCACCCGACTGGTGTCGACTCAGGTATTACCAGCTTTTCGGGCAACTACAACGCCGACCTGGCGCTATTTCGCGGCACGCATAACCGATCCAGTGAAAACGTCCAATTCGTGGCGCGTGTCGTTCCGGGCAGGCAAATTGATGTGGCCATCAAGAACACCGCCCAAACTGCTGGACTCCCCATCAAGCTGGTGGTCCTCAACGGCACCACTGTGGTGTCTTCCACCGACCTGACTACGATCGTTCAGGGTGGTGTCACACTGGTGACATGCTCCATCTACGGTGGAACCGTCTCGGGCACCGTCGTGGACCAGGCTGGCCAGCCTGCTACCCGCATCGTCCATGTTCACGAGCGCGAAACAGGGTCGGTGATCGGTAGAGGACGCAGCGACTCATCAGGTCTGTTCGAAATTCCGGTCATCGCGAAGGTGGGTACCACCATGTACGTAGTCGGCCTGGACGATGAGAACTCGCCGCTGATCAACGCTGTGATCGCCGATCGCATCGTGCTGGAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
1abff8402f3d6937ce6395f672e532f6b579a45d2c57407953f968bb577cd5b4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4846
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage suitable for treating a bacterial infection caused by Pseudomonas aeruginosa Santamaria-Corral,G., Aguilera-Correa,J.J., Esteban,J. and Garcia-Quintanilla,M. 2023-06-22 — GenBank