Protein

View in Explore
Genbank accession
WYW04239.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,61
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFSNQGAAQINGWSSETQGLQKRPPTKYIKRLYPAGALGTKPLVHMINRDSSEQYYVTFTGGGLVVHDLNGTEYAVRGYNGYANCANPRVDLRLITVADYTFVTNRNVVTALGGTLTQPAYSWLGQRALVSVRGGQYGRTMQILINGGIFATIQMPNGSAEKVPAGQPYAGMNQVDMTDATWIAEQLAAQLNTNLGAAGWSATSGPGWVMITAPSAGAFSSIQTRDGYGDQLMNGFMSQVQTFNKLPAQAPDGYIVEVTGESARSGDNYWVQYSLAGKVWRECAKPKIIEGFNNLTMPHALVRAADGQFDWVALNWDGRKCGDDDTNPMPSFVGDRINDIFFFRNRLGFIAGENVVMSRTSKYFNFFPASVSTLSDDDPIDVAISHNRVSILKYAVPFAEQLLLWSDQAQFVLSSSGVLSSKTVELDLTTEFDVSDGARPHGIGRGVYFAAPRASFTSLKRYYAIQDVSNVKSAEDVSAHVPSYLPNTVFNIAGSGTENFVSLISSGAPGNIYVYKFLYLDEILQQQSFSHWNFGTNVKVLACGSIGSYMYLMLDRPEGIMMERVEFTQSTIDIAQEPYRTYMDQKKLIQIGAYDIDQNISSVSIEGILGGLPLADSVFYTIDAQGVLLRHDGPWPSGSKLYFSGNRTGEYVVFGREYEFQYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWLNYEDSGSFEINVNNGSSEFVYVMAGGRLGTQTYLGELSLGTGQFKFPVTGNAQAQRVTISSSNPNPLNIIGCGWEGNYMRRSSGI
Physico‐chemical
properties
protein length:800 AA
molecular weight: 87737,51500 Da
isoelectric point:5,49692
aromaticity:0,11250
hydropathy:-0,20888

Domains

Domains [InterPro]
IPR058003
TTP
1–800
IPR058003
WYW04239.1
1 800
Architecture
TTP
TTP 1-800
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYW04239.1
1 800
Domain Start End Length (AA) Confidence
N-terminal 1 170 170 0,8928
Central domain 171 369 200 0,2033
C-terminal 370 800 430 0,1777
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-170
Central
171-369
C-terminal
370-800

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuP-Kallioja
[NCBI] 		3132678 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW04239.1 [NCBI]
Genbank nucleotide accession
PP496474 [NCBI]
CDS location
range 25800 -> 28202
strand +
CDS
ATGGGACTCGTTTCGCAATCCGTTAAGAACCTCAAAGGGGGTATCTCGCAACAACCTGACATCCTCCGCTTTTCCAACCAAGGTGCCGCTCAGATCAATGGGTGGTCCTCGGAGACTCAGGGTCTACAGAAGCGTCCACCAACCAAGTACATCAAGCGTCTCTATCCGGCTGGGGCATTGGGCACTAAGCCTCTGGTCCACATGATCAACCGGGACTCCAGCGAGCAATACTACGTCACCTTCACGGGTGGCGGTCTGGTGGTCCACGACCTCAATGGGACTGAGTACGCTGTGCGTGGCTACAACGGCTATGCCAACTGTGCGAACCCAAGGGTGGACCTAAGGTTGATCACTGTGGCCGACTACACGTTCGTCACCAACCGCAACGTGGTCACTGCTCTGGGTGGCACCTTGACTCAACCGGCCTACTCGTGGCTGGGCCAACGGGCCCTCGTGAGTGTGCGCGGTGGGCAGTATGGTCGCACCATGCAGATCCTCATCAACGGGGGCATCTTTGCGACCATTCAGATGCCTAACGGCTCCGCTGAGAAAGTGCCGGCTGGTCAACCCTATGCGGGCATGAACCAAGTTGACATGACGGACGCCACATGGATCGCTGAGCAACTGGCTGCCCAACTCAACACCAACCTTGGAGCCGCTGGGTGGTCTGCTACTTCTGGCCCCGGCTGGGTGATGATCACTGCGCCGTCTGCTGGAGCCTTCTCTTCGATCCAGACCCGTGATGGTTATGGCGACCAGCTAATGAACGGCTTCATGAGTCAAGTCCAGACGTTCAACAAGTTGCCCGCTCAGGCCCCTGATGGATACATCGTTGAGGTCACCGGTGAGTCTGCTCGCTCAGGCGACAACTACTGGGTCCAATACAGCCTCGCTGGGAAGGTCTGGAGGGAGTGCGCCAAGCCTAAGATCATCGAAGGGTTCAACAACCTGACCATGCCTCACGCGCTCGTAAGGGCTGCTGATGGGCAGTTCGATTGGGTGGCTCTCAACTGGGATGGCCGTAAGTGCGGTGACGATGACACGAACCCAATGCCGTCCTTCGTGGGCGACCGGATCAATGACATCTTCTTCTTCCGCAACCGCTTAGGGTTCATCGCTGGGGAGAACGTGGTGATGTCTCGGACCTCGAAGTATTTCAACTTCTTCCCGGCCTCCGTGAGCACCCTCAGTGATGACGATCCGATTGACGTGGCTATCTCTCACAACCGTGTGTCCATCCTGAAGTACGCCGTTCCATTCGCTGAGCAGTTGCTTCTCTGGTCGGATCAAGCTCAGTTCGTATTGTCGTCCTCTGGGGTTCTCTCATCGAAGACCGTAGAGCTGGACTTGACGACTGAGTTCGACGTGAGCGATGGGGCTCGCCCTCATGGCATTGGACGTGGCGTTTACTTCGCAGCACCTCGGGCATCCTTCACGAGCCTGAAGCGCTACTACGCGATCCAAGACGTGTCCAACGTGAAGTCCGCTGAGGATGTCTCGGCACACGTTCCAAGCTACCTGCCCAACACTGTGTTCAACATTGCAGGGTCAGGCACCGAGAACTTCGTGTCGCTCATCTCCTCTGGCGCACCGGGGAACATCTACGTCTACAAGTTCCTCTACCTCGACGAGATCCTCCAGCAACAATCCTTCTCCCACTGGAACTTCGGGACCAACGTGAAGGTGCTGGCGTGTGGGTCTATCGGCTCCTACATGTACCTCATGTTGGACCGCCCTGAGGGGATCATGATGGAACGGGTGGAGTTCACTCAGTCCACCATCGACATCGCTCAGGAACCCTACCGGACCTACATGGACCAGAAGAAGCTCATCCAGATCGGTGCGTATGACATCGACCAGAACATCTCTTCGGTGAGCATTGAGGGCATCCTTGGGGGTCTCCCTTTGGCCGACTCCGTGTTCTACACGATTGACGCTCAGGGTGTCCTACTGCGCCACGATGGGCCATGGCCTTCCGGCTCCAAGCTCTACTTCTCAGGCAACCGCACTGGCGAGTATGTGGTCTTCGGTCGTGAGTACGAGTTCCAGTACGAGTTCTCCAAGTTCCTCATCAAGCAGACCGCTGACGATGGATCGACCTCTACTGAGGACATCGGTCGTCTCCAGCTTCGCCGTGCGTGGTTGAACTACGAGGACTCAGGTTCGTTCGAGATCAACGTCAACAACGGCTCCTCAGAGTTCGTCTATGTGATGGCCGGTGGACGCCTTGGGACTCAGACGTATCTCGGTGAGCTATCGCTGGGCACTGGTCAATTCAAGTTCCCGGTGACGGGCAACGCCCAGGCACAACGAGTGACAATCAGCTCCTCCAATCCAAACCCATTGAACATCATCGGATGCGGCTGGGAGGGTAACTACATGCGCCGCTCAAGCGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fe8a63c73de00828465480c15b9e0dcc56a65791d959b7a21da97fdc29b00e80
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2957
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank