Protein

View in Explore
Genbank accession
XLD54490.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,80
Protein sequence
MADVQTRPDNDIFASAAGTGELLPFGDLARGWGATLGYSDGIPPMEWFNFIGNRTDKGIHYILQQGVDVWVATETYPVGALVKVQASNMLYRCLVQNINMAPANNPTQWRPVLDLTAATAAARQVGKNSGNLIQVGAFGLGGNAEVVTNASSITNDGLYQLTPTGVGGPESGVACELVHIQIDANNATQWAKPANKRILYLRDKINGTWNSWEGQYGPSNKPSAADLNIDQDFIPMDGSDSIRGNLGTVGWVHIARNTSDLFRAANSSGVAVHEVSGNVAGGTAVTEYMTSVSVSANSNLITAARWGSVPMTHIQHILVSGGATQINLAVSRAGGIADRRIAALSVDGANNRVTTLNSFTLCENGTRVYSPNNPQPVDLSSVVNSVRWGSEVTNPRTGGESFVLRVPSGHAATGFDIHSKSGREDEFRNVFSRPLQILVNGSWFTVGQI
Physico‐chemical
properties
protein length:449 AA
molecular weight: 47720,69950 Da
isoelectric point:5,91241
aromaticity:0,07350
hydropathy:-0,15278

Domains

Domains [InterPro]
DC_0104
STR
1–425
DC_0104
cd19958
STR
147–213
cd19958
XLD54490.1
1 449
Architecture
STR
STR 1-425 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLD54490.1
1 449
Domain Start End Length (AA) Confidence
N-terminal 1 190 190 0,8207
Central domain 191 389 200 0,0626
C-terminal 390 449 59 0,9990
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-190
Central
191-389
C-terminal
390-449

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage VB_ST-SA173
[NCBI] 		3366564 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLD54490.1 [NCBI]
Genbank nucleotide accession
PQ351918.1 [NCBI]
CDS location
range 18390 -> 19739
strand +
CDS
ATGGCTGATGTACAGACTAGACCGGATAATGACATCTTCGCGAGTGCTGCAGGCACTGGTGAGCTGTTACCATTCGGCGACCTTGCCCGTGGTTGGGGTGCGACCCTGGGTTACTCAGACGGTATTCCACCTATGGAGTGGTTCAACTTCATTGGTAACCGTACTGACAAAGGCATCCACTATATTCTGCAGCAAGGCGTTGACGTCTGGGTTGCCACCGAGACGTATCCTGTTGGTGCTCTTGTTAAAGTACAAGCAAGCAACATGCTCTATCGTTGCCTTGTACAGAATATTAACATGGCGCCAGCTAACAACCCAACCCAGTGGCGCCCTGTACTCGACCTTACTGCTGCAACTGCTGCTGCAAGACAGGTCGGCAAGAACTCAGGTAACCTGATTCAGGTTGGCGCGTTTGGCCTCGGTGGTAACGCTGAAGTTGTTACTAACGCATCGTCAATTACTAACGATGGCTTGTATCAGCTTACACCCACAGGAGTAGGTGGTCCAGAGTCAGGCGTTGCATGCGAGCTGGTTCATATCCAGATTGATGCTAATAACGCTACTCAATGGGCCAAGCCTGCTAATAAACGAATCCTGTACCTGCGCGACAAGATTAACGGTACCTGGAACTCATGGGAAGGTCAGTATGGTCCTAGCAATAAACCGTCTGCTGCAGACCTGAACATTGACCAGGACTTCATCCCTATGGATGGTTCTGACTCAATCCGTGGTAACCTCGGTACAGTAGGTTGGGTTCATATTGCGCGCAATACTTCTGACCTGTTCCGTGCTGCTAACTCTTCTGGTGTTGCAGTTCACGAGGTGTCTGGTAACGTAGCAGGCGGCACGGCAGTTACTGAGTACATGACCTCCGTATCTGTTTCGGCCAACAGTAACTTGATTACTGCGGCTCGCTGGGGTTCAGTACCTATGACGCACATCCAGCATATCCTGGTGTCTGGCGGTGCAACCCAGATTAACCTGGCTGTGTCTCGTGCCGGTGGTATTGCTGACAGACGTATTGCCGCACTGTCTGTGGATGGTGCAAATAACCGAGTCACCACACTAAATAGCTTTACTTTATGTGAAAATGGGACTAGAGTATATTCACCAAATAACCCTCAGCCTGTTGACTTATCGAGTGTCGTGAATAGCGTCCGTTGGGGTTCTGAAGTAACTAACCCAAGAACTGGCGGCGAATCCTTTGTGCTACGCGTCCCATCTGGTCACGCAGCAACTGGTTTCGATATTCATTCTAAGAGCGGTCGTGAAGATGAATTCCGTAATGTCTTCTCTCGTCCACTCCAGATTCTCGTTAATGGTAGCTGGTTCACTGTAGGACAAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
aabb8fe53b1f5671a619c7b75418272be1b2865daf08d698afacbcd918d8bc1c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6747
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Salmonella phage VB_ST_SA173 Sherif,M.M., Abdelaziz,N.A., Saleh,S.E. and Aboshanab,K.M. 1988-03 — GenBank