Protein

View in Explore
Genbank accession
YP_010772932.1 [GenBank]
Protein name
tail fiber domain-containing protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MPWYKTGTVSVTQNSNAVIGSGTAFIANSRVGDGFRGPDGGWYEVTNIASDTAMSISPNYQGATNGAGGYALAPLQGYVKESADRLRALVLQYGEKLAALGTTGNYDILPVAKGGTGATDSASALTSLGMKGGAYDALIKSIGFRGAPVGYNVQGLYMGWNGNNDGGANYICNRGGGLGGHAWWSVNSDNTAAGPVMTYSYSGVLSVAQLSVVGSPIALSSGGTSATTAAGARTNLGLGSAAIENTVPITKGGTGGTDGPSARAGLGLGATDAVTIRALELTHTTPWVDFHYNNTAADYDVRLINDSAGTLTLDGRFGSKATWCRTGLNGSRGTTGYNFNWTGSYVDVYIDATYIGSMTLFQSDYRLKKYIKEFSAPSFLDRIDAYRIVTYQRKNFGDVFKGGSDVYQGLIAHEAKEVNPLAASGEKDGVDENGNPRIQQLDPMALITDLMGAVKELRAELAALKASIQPAPEPVTA
Physico‐chemical
properties
protein length:477 AA
molecular weight: 49648,67720 Da
isoelectric point:5,67312
aromaticity:0,09015
hydropathy:-0,16415

Domains

Domains [InterPro]
DC_0162
STR
1–475
DC_0162
IPR030392
CHP
363–468
IPR030392
IPR030392
CHP
363–420
IPR030392 Coil
YP_010772932.1
1 477
Architecture
STR
STR 1-475 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Medea1
[NCBI] 		2834256 Uroviricota > Caudoviricetes > Medeavirus >
Host Pseudomonas syringae pv. tomato
[NCBI] 		323 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae group genomosp. 3

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010772932.1 [NCBI]
Genbank nucleotide accession
NC_074658.1 [NCBI]
CDS location
range 518 -> 1951
strand -
CDS
ATGCCTTGGTATAAAACCGGGACGGTTTCCGTTACCCAAAATTCAAACGCCGTTATTGGCAGTGGTACGGCATTCATTGCAAACAGCCGCGTCGGCGATGGCTTTCGTGGCCCGGATGGCGGCTGGTACGAGGTGACGAACATCGCCAGTGACACGGCCATGTCGATATCGCCAAACTATCAGGGTGCTACCAACGGCGCTGGCGGGTATGCGCTGGCTCCGCTGCAGGGCTACGTCAAGGAATCTGCTGACCGGCTGCGCGCTTTGGTTTTGCAGTACGGCGAAAAGCTGGCCGCGCTGGGCACGACCGGGAACTACGACATCCTGCCGGTGGCCAAGGGCGGGACTGGCGCTACTGATAGCGCTTCAGCGCTTACAAGTCTCGGCATGAAGGGCGGCGCTTACGACGCCCTGATCAAGAGCATCGGTTTTCGTGGTGCCCCGGTCGGTTACAACGTGCAAGGCCTTTACATGGGCTGGAATGGTAACAACGATGGCGGGGCGAATTATATATGCAACCGTGGCGGCGGCCTCGGCGGGCATGCCTGGTGGTCCGTTAACTCGGACAATACGGCGGCCGGCCCGGTAATGACGTACTCCTACAGCGGGGTCCTTTCTGTTGCTCAGCTGAGCGTCGTCGGCAGCCCAATTGCCCTCTCGTCAGGAGGGACAAGCGCCACTACAGCCGCGGGGGCCAGAACAAATCTCGGGCTTGGGAGTGCAGCGATTGAAAATACAGTGCCGATCACAAAAGGTGGTACTGGCGGCACGGATGGCCCCAGCGCGCGCGCAGGATTGGGTTTGGGCGCGACCGATGCCGTTACCATCAGGGCGCTGGAGCTCACCCACACAACCCCTTGGGTAGATTTTCACTACAACAACACAGCCGCTGACTATGACGTCCGCCTGATCAATGATTCGGCCGGGACGCTGACCCTCGATGGTCGCTTCGGATCGAAAGCAACTTGGTGCCGGACCGGCCTTAACGGATCGAGAGGCACGACCGGTTATAACTTCAACTGGACCGGCTCATATGTGGACGTCTATATCGACGCAACCTACATCGGTTCAATGACGCTCTTCCAATCGGATTACCGCCTCAAGAAGTACATAAAGGAATTTTCCGCACCGTCTTTTCTGGATCGTATCGACGCGTACCGAATTGTCACCTACCAGCGCAAGAACTTTGGAGACGTATTTAAAGGAGGCAGTGACGTTTATCAGGGCCTGATCGCCCACGAAGCCAAAGAAGTGAACCCGCTGGCCGCATCGGGCGAGAAGGACGGCGTCGATGAAAACGGCAACCCGCGTATTCAGCAACTCGACCCGATGGCGCTGATCACCGATCTGATGGGTGCCGTCAAAGAGCTGCGCGCCGAACTGGCCGCGCTCAAGGCGTCGATTCAGCCAGCACCAGAACCTGTCACCGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
757b7342b575fbb02cd3491e72f341b7ba4b1372ce7b238a739567018020f75a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7681
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel bacteriophage against Pseudomonas syringae pv. tomato and it's prophylactic efficacy Skliros,D., Papazoglou,P., Paraskevopoulou,E.G., Gkizi,D., Goumas,D.E., Tjamos,S. and Flemetakis,E. 2023-04-19 — GenBank