Protein

View in Explore
Genbank accession
ABP63593.1 [GenBank]
Protein name
BcepGomrgp22
RBP type
TF
Evidence RBPdetect
Probability 0,68
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MHATLIKLDNPFRPQIDRQASALVPGRRIRTILKQHEYIRDGKRQGAFVVVLNGQPILEKQWGRVVRDADILTVSRLPRGGGGSNPLQIVLMVALVAASIFIPGMQGIGLTMGTWQFAAASAAIMLGGTMMLNMMFPPPKPGMRSLTSEQTSPNYSLSAQGNMARLMEAIPVLYGRFKVQPDFAAQPYTEVRGADQYLYQLYCVTQGAADIDIANIFIGETPIANYPDVTVKVYQPGQRPDLFPTNVATSVDVAGQELKAPNESGYAPIGPFVIGAPGTKANSLAIDISSPSGVGRIDDNGNTQAQTLRWTVEYALVNDQGVPIGPWQVFWNGTATGASRNPARFTYRADVVPGRYAVRANRADAPNLDGRSLGRLIWENARIYLDEPTEYGEVTMIATVMKASNVLNQQTSRQLTCIGQRRLRKWDAVNGWSQPVATSNPAWAAADAITNPVYGRNLPDSRYNLQELVRLAGVWDARGDEFNGVFDTTGQFWDALTSIVRVGRAVPMYYAGLIDFIRDEPKSIPTAMFSPQNMVKNSFSATYQFAEVDTPDYVQIEYVDAKTWQTTVVDCALPDSIKTKAAKVEMMGITNHDQAWREGITMAARNRYQRRLINWSTELDGLIPKYGDLIQVSHDVPAWGYSGKVTALDKATRILTASEALPFAAGTPHAITFRRDDGSADGPYACIPYEQGFANQCLVQGDLTNIKISDGVKREFTIYQFGPVERRGMLVMATSASPSTDGIVAFEATNYSPQIYAAETGGTIPPEVPQSNLPTPPQAPNVDRISLTYTFVVGQQQIVATPANGADYYEFEASNDATVGSDGSVNGTFTRYPATRDPWVTVNLAAGRWYLRVRGVGTVKGAWRGDFFDVKATALPAPTIASFTTATALFGVNLMWAVDPLSKPISQTVEIWHGLNTTLGNATLLATFAPTANNYLHGNMGPGETHYYWIRVIDKAGRIGPWFNNGNPIVGQSSSDAKQILDALNGEITKTQLSQELWQQIEAASDFGPVYAAINEEKQARIDGDTALTQITTQQATQIGNNASAITNEATTRANADGALSTRIDTTNVRVGNNEAAIQTVSQAQATTDGKLSAMWAVKVQATVDGKYYLAGIGVGIENGPGGLQSQVLISADRFAIMNSTNAGATVSTPFVVQGGVVYMNSAFIQDGTITNAKIAGVIQSNVVNAQGRPAWVWDKNGTMEINGVGGGNGRLIIQNNRILIFDENGTLRVEMGQLS
Physico‐chemical
properties
protein length:1236 AA
molecular weight: 133895,50410 Da
isoelectric point:5,69648
aromaticity:0,08657
hydropathy:-0,18867

Domains

Domains [InterPro]
DC_0129
STR
1–1119
DC_0129 DC_2243
IPR055385
ATT
273–380
IPR055385 IPR032876 IPR053171
NF040662
Unmapped
277–757
NF040662 IPR015406
ABP63593.1
1 1236
Architecture
STR
ATT
STR
ATT
STR
RBD
STR 1-272 | ATT 273-380 | STR 381-492 | ATT 493-640 | STR 641-1119 | RBD 1120-1236
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage BcepGomr
[NCBI] 		437329 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Burkholderia cepacia
[NCBI] 		292 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABP63593.1 [NCBI]
Genbank nucleotide accession
EF523948 [NCBI]
CDS location
range 18355 -> 22065
strand +
CDS
ATGCACGCCACCCTCATCAAGCTGGACAATCCGTTTCGCCCGCAGATTGACCGCCAAGCGTCCGCCCTTGTTCCGGGGCGGCGCATCCGCACCATCCTCAAGCAGCACGAATACATTCGCGACGGCAAGCGCCAAGGGGCTTTTGTCGTCGTTCTGAATGGTCAACCCATTCTCGAAAAGCAGTGGGGCCGAGTCGTGCGCGATGCCGACATCCTCACCGTCTCTCGCCTGCCGCGCGGTGGCGGGGGCTCCAACCCGCTGCAAATCGTCCTCATGGTAGCACTGGTCGCCGCATCGATCTTCATCCCCGGTATGCAAGGCATCGGCCTCACGATGGGCACGTGGCAGTTTGCCGCAGCTTCGGCCGCGATCATGCTCGGCGGAACGATGATGCTGAACATGATGTTCCCGCCACCAAAGCCGGGGATGCGCAGCCTCACCAGCGAACAGACCAGCCCGAACTACTCCTTGAGCGCTCAGGGGAATATGGCTCGTCTGATGGAAGCCATCCCGGTGCTGTACGGTCGATTCAAGGTTCAGCCGGACTTCGCTGCTCAACCGTACACTGAAGTGCGCGGAGCCGATCAATACCTGTATCAGCTGTATTGCGTGACGCAGGGTGCAGCGGACATCGATATCGCCAACATTTTCATCGGTGAAACGCCGATTGCGAACTATCCGGATGTGACCGTAAAGGTCTACCAGCCGGGACAACGCCCCGATCTGTTTCCTACCAATGTGGCTACATCGGTCGATGTTGCTGGTCAGGAATTGAAGGCCCCGAACGAAAGCGGATATGCGCCGATTGGCCCGTTCGTTATCGGTGCTCCGGGGACCAAGGCAAACTCCCTTGCGATCGACATCAGTTCCCCGTCGGGGGTGGGTCGTATTGATGACAATGGCAACACGCAGGCACAGACGTTGCGCTGGACTGTCGAATACGCGCTTGTGAACGATCAAGGCGTGCCGATCGGCCCGTGGCAGGTATTCTGGAATGGCACCGCAACCGGAGCCAGCCGTAACCCTGCCCGCTTCACCTATCGAGCCGATGTCGTGCCGGGTCGCTATGCAGTGCGTGCAAACCGCGCAGATGCACCGAACCTCGATGGACGCAGCCTTGGCCGTCTCATCTGGGAGAACGCCCGCATTTATTTGGATGAGCCAACTGAATATGGCGAAGTCACGATGATTGCGACTGTGATGAAGGCGTCGAACGTTCTCAACCAGCAAACGAGCCGCCAATTGACCTGCATCGGTCAGCGCCGCCTTCGCAAATGGGATGCCGTGAACGGATGGAGTCAACCTGTAGCCACATCGAATCCGGCATGGGCGGCAGCAGATGCCATCACGAACCCGGTCTATGGGCGCAATCTCCCGGACTCCCGATACAACTTGCAAGAGCTTGTGCGGTTGGCTGGCGTCTGGGATGCTCGCGGCGATGAGTTCAATGGCGTGTTCGATACGACCGGCCAGTTCTGGGATGCTCTCACGAGCATCGTCCGGGTGGGTCGTGCTGTGCCCATGTATTACGCTGGGCTGATCGACTTCATCCGCGATGAACCGAAATCGATCCCGACCGCCATGTTCAGCCCGCAGAATATGGTCAAGAACTCATTCTCTGCCACGTACCAGTTCGCAGAAGTCGATACCCCGGACTATGTGCAGATCGAATATGTGGATGCTAAGACGTGGCAGACCACTGTCGTCGATTGCGCTCTGCCGGACTCGATCAAAACAAAGGCTGCGAAAGTCGAAATGATGGGGATCACCAATCACGACCAAGCGTGGCGTGAAGGTATCACCATGGCCGCTCGAAACCGCTATCAGCGCCGACTGATCAATTGGTCGACGGAGCTTGACGGCTTGATCCCGAAATACGGCGATCTGATCCAAGTGAGCCATGATGTCCCGGCTTGGGGCTATTCGGGCAAGGTGACGGCTCTCGACAAGGCTACGCGCATTCTCACGGCCTCTGAGGCGCTTCCTTTCGCTGCTGGCACCCCGCATGCCATCACCTTCCGCCGCGATGATGGCTCGGCCGATGGCCCGTATGCCTGCATTCCTTACGAACAGGGCTTTGCGAACCAGTGCCTTGTCCAAGGTGACTTGACTAACATCAAGATCAGCGATGGGGTGAAACGCGAGTTCACGATCTATCAGTTCGGCCCGGTTGAGCGCCGAGGCATGCTCGTCATGGCGACTTCTGCCAGCCCGAGCACTGATGGCATTGTGGCCTTCGAAGCGACTAACTATTCGCCGCAGATTTACGCGGCTGAGACCGGTGGGACGATTCCGCCGGAGGTTCCGCAAAGCAACCTGCCGACGCCTCCGCAAGCACCCAATGTGGACAGAATCAGCCTCACCTATACGTTCGTGGTCGGTCAACAGCAGATTGTTGCTACCCCGGCGAATGGGGCAGACTATTATGAGTTCGAAGCCTCAAACGATGCGACCGTTGGTTCTGATGGCTCAGTCAACGGCACCTTCACCCGCTATCCGGCGACTCGCGATCCATGGGTGACTGTGAACTTGGCGGCTGGGCGCTGGTATCTCCGAGTTCGCGGAGTAGGGACGGTGAAAGGTGCATGGCGCGGCGACTTCTTCGATGTGAAGGCCACGGCGCTCCCGGCCCCGACCATCGCATCCTTCACGACTGCCACGGCGCTGTTTGGCGTGAACTTGATGTGGGCGGTCGATCCGCTCTCCAAGCCTATTTCGCAAACGGTCGAAATTTGGCATGGTTTGAACACGACGCTTGGCAATGCGACTCTGCTGGCCACGTTTGCCCCGACTGCCAACAACTATCTCCATGGGAACATGGGGCCGGGTGAGACGCACTATTACTGGATTCGAGTGATCGATAAGGCTGGGCGAATCGGCCCGTGGTTCAATAACGGCAATCCGATTGTCGGTCAATCGTCCAGCGATGCAAAACAGATTCTTGACGCGCTCAATGGGGAAATCACCAAGACGCAATTGTCGCAAGAACTCTGGCAACAGATCGAGGCTGCTAGTGACTTCGGCCCGGTCTATGCCGCGATCAACGAGGAAAAGCAGGCTCGCATTGATGGCGATACTGCCTTGACCCAGATCACCACACAGCAAGCGACGCAGATTGGCAATAACGCCAGCGCGATCACTAACGAGGCAACGACTCGTGCGAATGCTGACGGTGCGCTCTCGACTCGGATCGATACGACCAATGTTCGCGTCGGCAATAACGAGGCGGCGATCCAGACGGTGAGCCAAGCCCAAGCAACGACCGATGGCAAGCTGAGCGCCATGTGGGCGGTGAAGGTGCAAGCGACCGTGGATGGAAAATACTATCTGGCCGGGATCGGTGTCGGTATCGAGAACGGGCCCGGTGGCTTGCAGTCTCAAGTTTTGATCAGTGCAGATCGATTCGCGATCATGAATAGCACGAATGCGGGCGCGACGGTCAGCACTCCATTTGTCGTGCAGGGCGGCGTGGTCTACATGAACTCGGCGTTCATTCAGGATGGCACGATCACGAATGCGAAGATCGCCGGGGTTATCCAATCCAATGTGGTCAACGCTCAAGGTCGACCTGCTTGGGTTTGGGACAAGAACGGTACCATGGAAATCAACGGCGTGGGTGGTGGCAATGGACGCCTTATCATCCAGAATAACCGGATTCTGATCTTTGATGAGAACGGTACGCTTCGCGTCGAAATGGGACAACTTTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e085f97f6ab58fbb30cd6dadbf8b8af5a21f928a6472a660be5550a0d2d16287
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2782
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genomic sequence of BcepGomr, a phage from North Carolina soils Summer,E.J., Das,A., Robinson,S., Camarena,A., Connolly,F., Palmieri,K., Gonzalez,C. and Young,R. 2011-09 — GenBank