Protein

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Genbank accession
QPB08538.1 [GenBank]
Protein name
YD repeat protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MEDFRVLLFKVIIMKEVARIEKGGNFKTTGRLLETAAKMSSANIVHDVDLSSPLCCDTSADTSWFKIVPSNMAGKANNLLDALGLDWRSPSAWGTSSADVTYNEGLDCLEVVGAKSLYFNGCFSVLRDVGFHIECEIQQIAGPGRVYVGGRYYDKAGNEVPAGSATHNPGTYDYLGVAGASLNPSTNWIKYHNHLSGGAPRKGVLAAGSGEYWRTDAVEYYRPLFLANYGKDNNSTVRIRNLRMWYEDNGTPIYHNGQITSLMKGGKTMIQTAGITPGDNNDSEIKTGWNGFQAEKRPYLMPSGHWGSYFKFTKDTSTESSGGVTFNTVVPSVLVEPNTTYTVSGIIKTDDIDRDLSNNFFYVREYDSTGTSIKTGGRWDRINEKIHLGDGWYLVWATFHTEPTTVKILCQSYQYIENTELWTGEFTFCKGNKVAYADELQTKDCGLIFKVKEMDTFCIFGDAIIGDDARGSAYEVSAEDGTRMLSLQDSSGYWCHFEFDTDGTSTGGRLVPDASSKWNTSATQSIFKAPLYFDRGMRVFYVLQKTANGDLELKFYNDRVQSITQVFRLSASNMNNPVISNFVLGKGTNWDCFHSFFTMYSSILTEEEIFELIKKRLVVSESSVRDTISEFRKDEDLFYVDMTPYHKHMRGEGFLTTTGETNLLEEDEPIYSFDARGGGGTYGLNRVMTPYGWGVMITGEDSQQATLSTSGHYAYKEVDLNLSANSPFRMSCWVYVSPDWDGGDKVLKYEGATGIRWEKFDPTLKGEWQRVTLHYSSSSPTVGYVRALFYNELCKTTKGHIIMSDFRLTYTWNNSLHSKGRVTDQDHKMYFRLYEDYGIDMTKDWTFCYWKMPIASHANTFGGYNVDSIGLSGGTTKVEPFEETTYFYWGKNNAESVFAGTSVPIGSKYYMFWRFVVITYKVGEGLKVYEIGEDSEYERLLTATIPTRPDHAYSSQLDSDLQLGGWGSSNRCTALYRDIKVGQHHLTYEKAKDIYREGLRLSKETVSLSGSFIEGSLD
Physico‐chemical
properties
protein length:1018 AA
molecular weight: 114537,77800 Da
isoelectric point:5,45173
aromaticity:0,13065
hydropathy:-0,41876

Domains

Domains [InterPro]
G3DSA:2.60.120.260
STR
274–444
G3DSA:2.60.120.260
G3DSA:2.60.120.260
STR
274–440
G3DSA:2.60.120.260
QPB08538.1
1 1018
Architecture
STR
STR 274-444 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPB08538.1
1 1018
Domain Start End Length (AA) Confidence
N-terminal 1 172 172 0,1877
Central domain 173 371 200 0,1994
C-terminal 372 1018 646 0,5391
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-172
Central
173-371
C-terminal
372-1018

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Va2
[NCBI] 		2783668 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPB08538.1 [NCBI]
Genbank nucleotide accession
MW073017 [NCBI]
CDS location
range 60027 -> 63083
strand +
CDS
ATGGAGGACTTCCGAGTCCTCCTCTTTAAGGTAATAATTATGAAAGAAGTAGCAAGAATAGAAAAAGGTGGTAATTTCAAAACTACTGGTAGATTGCTTGAAACTGCTGCTAAAATGAGTAGTGCAAACATTGTGCATGATGTTGACTTAAGCTCACCTCTATGTTGCGATACTTCTGCAGATACGAGCTGGTTTAAGATTGTGCCATCTAACATGGCAGGTAAAGCTAATAACTTACTAGATGCTTTAGGTTTGGATTGGAGAAGTCCTAGTGCTTGGGGTACATCTTCTGCTGATGTAACTTATAATGAAGGTCTAGATTGTTTAGAGGTGGTTGGTGCTAAGTCACTATACTTCAATGGTTGCTTTTCTGTATTGAGAGATGTAGGATTCCATATTGAATGTGAAATCCAACAAATAGCAGGTCCAGGTAGAGTCTACGTAGGTGGACGATACTACGACAAAGCAGGTAATGAAGTTCCTGCAGGTTCAGCAACTCACAACCCAGGTACTTACGATTACCTAGGAGTGGCTGGTGCATCCTTAAACCCTTCAACTAATTGGATTAAATATCATAACCACTTATCAGGTGGTGCACCTCGTAAAGGTGTACTGGCTGCAGGTTCTGGTGAATACTGGAGAACAGATGCTGTAGAATACTATAGACCTCTGTTCCTAGCGAACTACGGAAAAGATAACAACTCAACTGTTAGAATCCGTAATTTAAGAATGTGGTACGAGGATAACGGAACTCCTATCTACCACAACGGTCAAATTACCTCCTTGATGAAAGGTGGTAAAACTATGATTCAGACTGCTGGTATCACTCCAGGTGATAACAATGACTCTGAAATTAAGACAGGTTGGAATGGTTTCCAAGCTGAGAAACGACCATACCTGATGCCTTCAGGTCATTGGGGTTCGTACTTTAAATTCACAAAAGATACAAGTACTGAGTCAAGTGGTGGTGTTACTTTCAACACTGTAGTTCCTTCAGTCTTGGTCGAACCTAACACCACTTATACTGTTTCAGGTATTATAAAGACTGATGACATAGATAGAGACTTAAGTAACAACTTCTTCTATGTTCGTGAGTATGATAGCACTGGGACTTCTATAAAGACTGGTGGTCGTTGGGATAGGATTAATGAGAAGATTCATCTAGGTGACGGTTGGTATCTAGTATGGGCAACCTTCCACACAGAACCAACTACAGTAAAAATCCTCTGCCAATCTTACCAGTACATAGAGAATACTGAGTTATGGACAGGTGAGTTCACTTTCTGTAAAGGTAATAAAGTTGCTTATGCGGACGAACTACAGACAAAGGATTGTGGTTTAATTTTCAAAGTTAAAGAGATGGATACTTTCTGTATCTTCGGTGACGCTATAATTGGTGATGATGCCAGAGGTTCAGCTTATGAAGTGAGTGCTGAAGATGGAACTCGTATGTTAAGTCTTCAAGATTCTTCAGGTTACTGGTGTCACTTTGAATTCGATACTGATGGTACTTCAACTGGAGGTAGACTTGTTCCTGATGCATCTTCTAAGTGGAACACGTCAGCTACTCAATCGATATTTAAAGCTCCACTCTACTTTGATAGAGGTATGAGAGTCTTTTACGTACTTCAGAAGACAGCAAATGGAGACTTAGAGCTAAAATTCTACAATGATAGAGTTCAGAGCATCACTCAAGTTTTCCGACTTTCTGCTTCAAATATGAACAACCCAGTGATCTCCAACTTCGTTCTAGGTAAAGGCACTAACTGGGACTGCTTCCATAGCTTCTTCACGATGTATTCGAGTATCCTTACAGAGGAAGAGATATTCGAACTCATTAAGAAACGTCTAGTGGTTAGTGAGTCCAGCGTTAGAGATACTATCTCTGAGTTCAGAAAGGATGAAGATCTATTCTACGTAGACATGACACCTTATCATAAACATATGAGAGGTGAAGGTTTCTTAACTACTACAGGTGAGACTAACCTCCTAGAGGAAGATGAGCCTATTTACTCATTCGATGCTAGAGGTGGCGGTGGTACTTATGGTCTAAATCGTGTGATGACTCCTTATGGTTGGGGTGTAATGATAACAGGTGAAGATAGTCAACAAGCTACTTTATCTACTTCAGGACACTATGCATACAAAGAAGTAGACTTGAACTTAAGTGCGAATTCACCCTTCAGAATGTCATGCTGGGTTTATGTATCTCCAGATTGGGATGGAGGTGACAAAGTATTGAAGTACGAAGGTGCTACAGGCATTCGTTGGGAGAAATTCGACCCTACTCTTAAAGGTGAGTGGCAACGAGTTACTCTGCACTACTCTTCAAGTTCTCCTACTGTAGGCTATGTCAGAGCGTTATTCTATAATGAACTCTGCAAGACTACTAAAGGTCACATCATCATGTCTGACTTCCGTCTGACGTATACTTGGAACAACTCTCTCCATTCTAAAGGGAGAGTGACTGATCAAGATCATAAGATGTATTTCAGACTGTATGAAGATTACGGTATCGATATGACTAAAGATTGGACTTTCTGCTATTGGAAGATGCCAATTGCTAGTCATGCTAACACGTTCGGTGGTTATAACGTTGACTCGATAGGTCTTAGTGGTGGTACGACTAAAGTAGAACCATTCGAAGAAACTACTTACTTCTACTGGGGTAAGAATAATGCTGAGAGTGTCTTTGCAGGTACGAGCGTTCCTATAGGTAGTAAGTACTACATGTTCTGGAGATTCGTGGTTATCACTTATAAAGTAGGTGAAGGTCTCAAAGTTTATGAGATAGGTGAAGACAGTGAGTATGAAAGATTACTTACCGCTACAATCCCTACCAGACCGGATCATGCATACTCATCTCAATTAGATTCTGATTTACAACTAGGTGGCTGGGGTAGTAGCAATCGATGTACTGCTCTCTACCGAGATATCAAAGTAGGTCAGCACCATCTGACGTATGAGAAAGCTAAAGATATTTATCGTGAAGGTCTGAGACTTTCTAAAGAGACAGTTTCACTAAGTGGTTCCTTCATTGAAGGTAGTCTAGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2c089629c7f6b71d8008f7c7729d150798ba82b06799ed152bdaef82e18fccf9
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2777
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50