Protein

View in Explore
Genbank accession
XMR01252.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MSISFNNPLDTMTSTGANGSLELIVLGGTPTNPRPIRFNSSSVILPVQALPAGEQGAMVFDRNELVLKYHNGTSWIAVYDTDTILEPIRISLDEVNRKLNLKVETVTYSSSAVPSASISGTNLNIVFPTQSSSGTGPTGLYTSMKPGAITQYSLTSGQTVASIREQMSGVTNGQSGRNGSQGSPWKTSDGWCFADGMWWTWDGENGTITKQVPNLNQEAYLKGITTSGVTKTDSVIASSASISGTAISIDQLPPHSFSFSGTTGAAGRHSHSQALKGMDRSGLNALTSSNDNGIPTVINNINEAPNHVHSFSGSTNTVGSGQAHTHGISNIDVPHFNVAYLYNIAESNVALSEKVANTRYVLKTGDVMTGSLTIANSASIRSNDTSLVLYFRNATNGERAAIYHSSSNNTLRLRSNGGSEVSINSSGVLTSPSLVVSSNSATVSGKNIVRSVNGTAADASGNVTISTTTTSASLTQNGWYKDNNTGMITQWGYLAVGDDSYVTVTLPIPYPNACLNLQVTGRVSGRPDNDAAWASHGNILSNSQIAVGAANPNDDNPRGLGVYWTTIGY
Physico‐chemical
properties
protein length:569 AA
molecular weight: 59753,18950 Da
isoelectric point:6,11840
aromaticity:0,06503
hydropathy:-0,24376

Domains

Domains [InterPro]
DC_1142
STR
284–425
DC_1142 G3DSA:2.60.40.3940
IPR054075
RBD
484–569
IPR054075
XMR01252.1
1 569
Architecture
STR
RBD
STR 284-425 | RBD 471-569
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR01252.1
1 569
Domain Start End Length (AA) Confidence
N-terminal 1 178 178 0,9725
Central domain 179 377 200 0,0956
C-terminal 378 569 191 0,9604
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-178
Central
179-377
C-terminal
378-569

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey3
[NCBI] 		3375710 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR01252.1 [NCBI]
Genbank nucleotide accession
PQ471515.1 [NCBI]
CDS location
range 208377 -> 210086
strand +
CDS
ATGAGCATAAGTTTTAATAACCCACTGGATACTATGACTAGTACTGGTGCTAATGGATCTTTAGAACTAATAGTGCTTGGTGGTACACCAACTAATCCAAGACCTATTCGTTTTAATTCATCTTCTGTCATTTTACCAGTACAGGCATTGCCAGCAGGTGAGCAAGGTGCTATGGTATTTGATAGAAATGAGTTGGTGTTAAAATACCACAACGGGACAAGTTGGATTGCAGTATACGATACTGATACAATTCTTGAACCAATCCGTATTTCACTCGATGAAGTGAACCGCAAACTGAATTTAAAAGTTGAAACAGTAACATATAGTAGTAGTGCTGTTCCAAGTGCGAGCATTAGTGGTACGAATTTAAATATCGTATTCCCTACTCAATCAAGTAGCGGTACTGGTCCAACAGGTCTTTACACTTCAATGAAGCCTGGTGCAATTACCCAGTACTCATTGACTTCTGGACAAACTGTTGCTAGTATTCGTGAACAGATGTCTGGAGTAACCAATGGTCAAAGTGGTCGTAATGGTTCACAAGGTTCTCCGTGGAAAACTTCTGATGGTTGGTGTTTTGCTGATGGAATGTGGTGGACATGGGATGGTGAAAATGGTACAATCACAAAACAAGTTCCAAATCTTAACCAAGAAGCATACTTGAAAGGTATTACCACATCAGGCGTAACTAAAACTGATAGTGTGATTGCAAGTAGTGCATCAATTAGTGGTACTGCGATATCAATTGATCAACTTCCACCGCACTCATTTAGTTTCAGTGGAACTACTGGTGCTGCTGGTCGTCATAGTCATAGCCAAGCACTAAAAGGTATGGACAGAAGTGGTCTTAATGCGTTAACATCCAGTAACGACAACGGAATCCCAACTGTAATTAATAACATTAACGAAGCACCTAATCACGTGCATAGTTTCAGTGGTTCAACCAATACCGTTGGTAGTGGACAAGCACATACCCACGGAATTAGCAATATTGACGTACCACACTTTAATGTGGCATACTTATATAACATTGCTGAGTCTAACGTTGCATTGAGTGAAAAAGTTGCAAACACCCGTTATGTACTTAAAACTGGTGATGTAATGACTGGTTCATTGACTATTGCTAACAGTGCTTCTATACGTTCAAATGACACTTCATTAGTACTTTACTTCCGTAATGCTACTAATGGTGAACGTGCAGCAATTTATCATAGTTCATCTAACAATACATTACGTTTGAGAAGTAATGGTGGTTCTGAAGTTTCTATCAACTCTTCAGGTGTACTAACTTCCCCATCGTTAGTTGTTAGTTCTAACTCTGCAACAGTTTCTGGTAAAAACATTGTACGTTCAGTTAACGGTACAGCGGCAGATGCCAGTGGTAATGTTACTATATCTACCACAACAACTTCTGCGTCTTTGACACAAAATGGCTGGTATAAAGATAACAATACTGGTATGATAACTCAGTGGGGATACTTGGCAGTAGGGGATGATTCTTATGTAACTGTAACATTACCTATACCATACCCAAATGCTTGTTTAAATCTACAAGTAACTGGTAGAGTATCAGGTCGTCCAGATAATGATGCTGCATGGGCATCACATGGTAATATTTTAAGTAACTCGCAAATTGCTGTTGGTGCAGCTAACCCAAATGATGATAATCCACGTGGACTAGGTGTTTACTGGACAACAATCGGTTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
54edff530108c3a855ec6cb30ab5c766b7c2cc0b10517710dd82a90eee9c584b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6332
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank