Protein

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Genbank accession
YP_011108793.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDQDIKTVIQYPVGATEFDIPFDYLSRKFVRVSLVADDNRRLLSNITEYRYVSKTRVKLLVATTGFDRVEIRRFTSASERIVDFSDGSVLRATDLNVSQIQSAHIAEEARDSALMAMPQDDVGNLDARNRRIVRLAPGVEGTDAINKNQLDTTLGEAGGILSEIKQTEKDIQDYIENFADDTTSLKGINWVYNNGSANGGETSILITREGPVFAVPTIYINGDRQSVGYHYSYDSGDKTIHLVKPLTAGDFVECVTSEGVLPLSNLLSTPDGASQIGTKSGLTVQDYLNGVKSATILRNIEPVIDGQRIVLSEISPTLGPKSGGTLVYDQSDTSSVDDGYTVFVTAGGKRWKREESYIDVAWFGPNFGLALQTAVNLVDNYVRTVGFYSRKTIYIAAGTYTTDRQVDIPSYVSVVAIGNVSINGSGLPVNSYVLRITNKVGGIVTTHHSGWNLGAVGGTLRLVGNGNTGQVDGLYVGGATSMSDVRNVSLYAVSTSGVRYGLTFGSTNTYLFTATKCHFETSLVNLYIPGTTSSNSGEKMVFNDTVFGGSSRNHVEVSTPGMDLTFNNCSFDFTSGSVLYGTETWGYAKVGLNNCHFEGFNSLWIKVDAPQGGFIGSNRAITVSNATVLPRLRSNTAGTNSASRMHIDAKSTPVYISGLDLRHEVVPYTEEIFMASAETTLSLQGYLKDPYFQIPSAAHIQNRGWNIADETTGTVVNSPATLDSLTRFTCTERNAMSAAVVDGGTSGKLLAMTGAGGYFTLVTKGFIPVSTFQRIGGAMSIQAAASTGNIQCTLGVQWFDYDGNLIGTDQAFAINMREVFNNSSLPNFAAGNNRFISTSARTFRAPAGAAKCKPLWRISGHTGVVNISRLASFVL
Physico‐chemical
properties
protein length:875 AA
molecular weight: 94279,50660 Da
isoelectric point:5,83136
aromaticity:0,09029
hydropathy:-0,10857

Domains

Domains [InterPro]
DC_1263
ATT
1–248
DC_1263 DC_1149
IPR005604
ATT
3–127
IPR005604 DC_0983 IPR011050
IPR011049
STR
81–185
IPR011049
YP_011108793.1
1 875
Architecture
ATT
STR
ATT 1-248 | STR 249-875
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011108793.1
1 875
Domain Start End Length (AA) Confidence
N-terminal 1 367 367 0,9977
Central domain 368 700 334 0,9920
C-terminal 701 875 174 0,9823
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-367
Central
368-700
C-terminal
701-875

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage Saitama
[NCBI] 		3018528 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella quasipneumoniae
[NCBI] 		1463165 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011108793.1 [NCBI]
Genbank nucleotide accession
NC_092456.1 [NCBI]
CDS location
range 32784 -> 35411
strand +
CDS
ATGGACCAAGACATTAAAACAGTCATTCAGTACCCAGTAGGGGCCACTGAGTTCGACATCCCGTTCGACTACCTGTCCCGTAAGTTTGTCCGTGTGTCGCTGGTAGCTGACGACAACCGCAGACTGCTGAGTAATATCACTGAGTACCGCTACGTGTCTAAGACCAGAGTGAAGCTCCTCGTGGCGACCACTGGGTTCGACCGTGTGGAAATCCGCAGGTTCACCTCAGCGTCTGAGCGAATCGTTGACTTCAGTGACGGCTCCGTACTGCGGGCAACAGACCTTAACGTTTCTCAGATTCAGTCTGCCCATATCGCAGAGGAAGCACGTGATTCAGCGCTGATGGCAATGCCTCAGGATGACGTAGGCAACCTTGATGCTCGTAACCGTAGAATCGTTCGGCTGGCTCCGGGTGTCGAAGGTACGGATGCAATCAACAAGAACCAGCTGGACACCACCTTAGGTGAAGCTGGTGGCATCCTGTCGGAAATCAAACAGACCGAGAAGGACATTCAGGATTACATCGAGAACTTTGCAGATGACACCACGTCTCTCAAGGGAATCAACTGGGTGTATAACAATGGGTCGGCCAATGGTGGCGAGACCTCCATCCTGATTACCCGCGAGGGGCCAGTGTTCGCTGTGCCTACCATTTACATCAATGGGGACAGACAGTCTGTTGGTTACCACTACTCTTACGACTCAGGTGATAAGACCATTCACCTAGTTAAGCCGCTAACTGCTGGAGACTTTGTGGAATGTGTTACCTCTGAGGGCGTACTGCCGCTGTCTAATCTTCTGTCGACACCAGACGGGGCCAGTCAGATTGGCACTAAAAGCGGCCTGACTGTGCAGGACTACCTGAACGGCGTGAAGTCCGCTACCATTCTGCGCAACATTGAGCCAGTCATTGATGGGCAGCGCATCGTCCTCTCTGAGATTAGCCCTACTTTGGGGCCTAAGTCTGGAGGTACCTTGGTGTATGACCAGTCTGATACATCCTCTGTGGACGACGGGTACACTGTTTTCGTGACAGCTGGCGGTAAACGGTGGAAGCGAGAAGAGTCCTACATTGACGTAGCGTGGTTCGGTCCTAACTTTGGCCTTGCCTTACAGACCGCTGTTAACCTCGTTGACAACTACGTGAGAACTGTCGGTTTCTACAGTCGCAAGACCATCTACATTGCAGCTGGTACCTATACGACAGACCGTCAGGTGGACATCCCATCTTATGTCTCTGTGGTGGCCATAGGCAACGTTAGCATCAATGGTTCTGGGCTTCCAGTAAACTCCTACGTACTCCGCATAACGAACAAGGTTGGTGGCATTGTCACAACCCACCACTCAGGGTGGAACCTCGGGGCCGTAGGTGGGACCCTTCGTCTGGTAGGAAACGGCAACACCGGGCAAGTGGATGGGCTTTATGTGGGCGGTGCGACTTCTATGAGCGACGTACGGAACGTTAGCCTTTATGCTGTGTCAACTTCGGGCGTTCGCTATGGGCTAACATTTGGTAGCACCAACACTTACCTCTTCACGGCAACCAAATGCCACTTTGAGACGTCTCTTGTAAACCTGTACATTCCGGGCACCACAAGCTCTAACTCAGGGGAGAAGATGGTATTCAACGATACTGTGTTCGGTGGCTCATCTAGGAACCACGTAGAGGTAAGTACCCCAGGCATGGACCTCACGTTCAATAACTGCTCTTTCGACTTCACAAGCGGTAGCGTCCTGTACGGGACAGAGACTTGGGGCTATGCGAAAGTAGGTCTGAATAATTGCCACTTCGAGGGGTTCAATAGTTTGTGGATAAAGGTGGATGCCCCGCAAGGTGGATTCATTGGGTCAAACCGAGCGATAACTGTATCAAACGCCACAGTCCTTCCGAGGCTTCGCTCCAACACTGCTGGAACAAACTCGGCGAGCCGTATGCACATTGATGCCAAGTCTACCCCAGTGTATATCAGCGGGCTGGACCTACGGCACGAGGTCGTACCCTACACCGAGGAAATCTTCATGGCTTCAGCTGAAACTACCCTGTCTCTGCAAGGATATCTTAAGGACCCGTACTTCCAGATTCCGAGTGCTGCGCACATTCAGAACCGTGGGTGGAACATCGCTGACGAAACAACTGGAACCGTTGTGAACAGCCCCGCAACCTTGGATTCCCTTACGCGATTTACATGCACCGAGAGGAACGCGATGTCTGCGGCTGTGGTCGATGGTGGAACTTCTGGTAAGCTCTTAGCAATGACTGGGGCGGGTGGGTATTTCACTCTGGTCACTAAAGGATTCATTCCGGTGAGTACGTTCCAACGGATTGGCGGAGCAATGTCGATTCAGGCAGCAGCAAGTACCGGAAACATCCAGTGCACGCTTGGTGTCCAGTGGTTCGACTATGATGGTAACCTAATCGGGACAGACCAAGCCTTTGCGATTAACATGCGTGAAGTGTTCAACAACTCTTCTCTGCCTAACTTCGCCGCCGGTAACAACCGCTTCATCTCTACATCTGCGAGAACATTCCGTGCGCCAGCCGGGGCCGCTAAGTGTAAACCATTGTGGCGAATCTCTGGTCATACTGGCGTTGTGAACATCTCGAGATTAGCATCATTTGTTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
399c033368cba85d15f91e4e417d2dc937a4f31d77ee295707435bb07596dcbf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7291
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondoviruses Elek,C.K.A. and Adriaenssens,E.M. — — GenBank