Protein

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Genbank accession
YP_009021667.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,75
Protein sequence
MSVDKSAKTISIQEADTLDPNVTGGTDYLIAYRIHMQGNAPTDGKVRIYLWDTVTGTYLKDVNGNIMGSQRNYKINEELGYISVIGVVNAKGAKTFTTHVMDDFVDDEVIISSRTEGASGILIQALTSDEKTSPALLQFEQDSNQEINFDSKYYGPNLITLEWMLQSDSPSVTIPAGSVKGLNDGSVFHAIGQTALSISDKAMNLISADFNLGKFVNPDDTHMLRGKTIKAYTTLANPDGDLVMAMFKWTGAPGGATTEIYGSRNQSGGIIPVAGWELVEEDVIVTQALGDFHEYSKNFTVPDDAVELAIILYPSLGLSTDNIHIKGFNADVVNPFMGYIVKAPELYTEQHLKSSPQYAKLVQDRQNYASLRYSLNSTPVGGVPMPVGMIKAGKANISIDRSVNVVVGSAAQGGEGAIQFNDEGRVVVKTELYIYPGEALPKGNKATARFWYATVSNDGQTFTKIPDSETSFLVTGGDLPAKCKMNTFGLNVQAGDRIVLLSLTDAPDDAYIASNFTSTMLTTEISFDELVAQGYDSVFDSIDLSQFERSYTGVMTVAKLVSNVASKTFVLDIPSDMNVSILGAMKQVGNIVRPVRSLDWSYNNSTKELMVSFGETVALGEILIGVYSL
Physico‐chemical
properties
protein length:629 AA
molecular weight: 68097,05020 Da
isoelectric point:4,66918
aromaticity:0,08585
hydropathy:-0,07886

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009021667.1
1 629
Domain Start End Length (AA) Confidence
N-terminal 1 163 163 0,8649
Central domain 164 362 200 0,2283
C-terminal 363 629 266 0,5930
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-163
Central
164-362
C-terminal
363-629

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage CHOED
[NCBI] 		1458716 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio anguillarum
[NCBI] 		55601 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009021667.1 [NCBI]
Genbank nucleotide accession
NC_023863 [NCBI]
CDS location
range 4 -> 1893
strand +
CDS
ATGAGTGTAGATAAGAGCGCAAAGACAATTAGCATCCAAGAAGCTGATACTCTTGACCCTAATGTTACTGGTGGTACTGATTATCTAATTGCTTATCGTATTCACATGCAAGGTAATGCGCCTACTGATGGTAAAGTGCGTATCTACCTGTGGGATACAGTTACAGGTACTTATCTCAAGGATGTCAATGGAAACATTATGGGGTCCCAGAGAAACTACAAGATTAATGAGGAGTTAGGTTATATCTCAGTGATTGGCGTGGTTAATGCTAAAGGTGCTAAAACATTCACCACTCACGTTATGGATGATTTTGTTGATGATGAGGTTATTATCTCTAGTCGTACCGAAGGTGCCAGTGGTATTCTTATTCAAGCACTAACGTCTGATGAGAAGACATCACCTGCGCTTCTTCAATTCGAGCAGGATTCCAATCAAGAGATTAATTTCGATTCTAAATACTATGGGCCTAATCTAATTACCTTAGAGTGGATGCTACAATCCGATTCACCTAGTGTTACAATCCCGGCGGGGAGCGTCAAAGGGTTAAATGATGGTTCTGTATTCCATGCTATAGGGCAAACAGCGTTATCTATATCAGATAAAGCTATGAACCTAATATCTGCTGACTTCAATTTAGGTAAGTTCGTCAATCCTGATGATACCCATATGCTCCGTGGGAAAACCATTAAAGCCTACACGACCCTAGCGAATCCTGATGGGGATTTAGTTATGGCTATGTTTAAGTGGACAGGCGCTCCCGGTGGTGCTACTACTGAGATTTATGGTTCACGTAATCAAAGTGGGGGTATCATACCAGTAGCAGGTTGGGAACTAGTAGAGGAGGATGTGATTGTCACTCAAGCCCTCGGGGATTTCCATGAATACTCTAAGAACTTCACGGTTCCTGATGATGCTGTTGAGTTAGCCATTATTCTTTACCCTAGTTTAGGGTTATCGACTGATAATATTCACATCAAAGGCTTCAATGCTGATGTGGTTAATCCTTTCATGGGCTACATTGTTAAAGCCCCTGAGTTGTATACAGAACAGCATCTAAAGAGTAGTCCGCAATACGCTAAATTGGTTCAGGATAGGCAAAATTATGCATCGTTACGTTACTCCTTAAACAGTACACCTGTTGGAGGTGTCCCAATGCCTGTAGGTATGATAAAAGCAGGTAAGGCCAATATATCCATTGATAGGTCAGTTAACGTAGTCGTCGGCTCTGCTGCTCAGGGTGGTGAAGGTGCAATTCAGTTCAATGATGAGGGTAGAGTTGTTGTTAAGACAGAACTCTACATTTATCCCGGTGAAGCCTTACCGAAGGGTAATAAAGCCACTGCGAGATTCTGGTATGCTACTGTCTCTAATGACGGCCAAACATTCACTAAGATTCCTGACTCAGAGACAAGCTTCCTTGTTACTGGGGGTGATTTACCTGCTAAATGCAAGATGAATACCTTTGGTCTAAATGTTCAGGCAGGTGATAGAATCGTATTACTTAGCTTAACAGATGCACCTGATGATGCTTACATTGCGTCTAATTTTACATCTACCATGCTGACAACAGAGATTAGCTTTGATGAACTTGTGGCTCAAGGTTATGACTCTGTGTTTGATAGTATTGATTTATCACAATTTGAGAGGTCTTACACAGGTGTAATGACTGTTGCTAAACTCGTATCAAATGTGGCATCAAAGACATTTGTGCTTGACATCCCAAGTGATATGAATGTGTCCATCTTAGGGGCTATGAAGCAGGTAGGTAATATCGTACGTCCTGTGAGGTCACTTGATTGGTCTTACAACAACTCTACTAAAGAACTAATGGTTTCCTTTGGGGAAACAGTGGCTCTTGGTGAGATATTAATAGGAGTATATTCTCTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d1dfc2d2bf7acbf820f442f11e27c4246290f1df08e3c32d02344c2c8b099fb9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4945
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Vibrio anguillarum bacteriophage CHOED of the family Podoviridae, successfully used for phage therapy in aquaculture Romero,J., Gajardo,F., Higuera,G., Castillo,D., Middleboe,M., Garcia,K., Ramirez,C. and Espejo,R. 2014-08-28 — GenBank