Protein

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Genbank accession
XPO97473.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MAAMTPQQSVRAVYKAEQEINSTENKNTSASTVKGDNGFCILASVYNSSSDQYIQNFKAITFDSVPEIGVTREADVTSFPVESGSDVSDHVQIKNNRFKLSGIITETPIRLMRDQLYSAGVNGARISQAIEYLDQIFESRQPIVLLTEHRTFENVILKGYSYDYKSEFAMQFDLEFEQIRLVSKATTNAIAVKTAPNKSTGGDVKGQVPSGGPKVDNPITRNTASSTGTPTNTGN
Physico‐chemical
properties
protein length:235 AA
molecular weight: 25693,30340 Da
isoelectric point:5,50909
aromaticity:0,07660
hydropathy:-0,43447

Domains

Domains [InterPro]
DC_0628
STR
42–235
DC_0628
IPR048494
ATT
62–188
IPR048494
XPO97473.1
1 235
Architecture
STR
ATT
STR
STR 42-61 | ATT 62-188 | STR 189-235
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPO97473.1
1 235
Domain Start End Length (AA) Confidence
N-terminal 1 130 130 0,8382
Central domain 131 224 95 0,0197
C-terminal 225 235 10 0,8084
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-130
Central
131-224
C-terminal
225-235

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage SF1-1
[NCBI] 		3385252 Viruses >
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPO97473.1 [NCBI]
Genbank nucleotide accession
PQ571307.1 [NCBI]
CDS location
range 495 -> 1202
strand -
CDS
ATGGCAGCAATGACTCCACAACAGTCGGTGAGAGCCGTCTATAAGGCAGAACAGGAAATCAACTCTACCGAGAATAAAAATACCTCGGCATCTACTGTAAAGGGTGATAATGGTTTCTGCATTTTAGCAAGTGTTTATAATAGTTCAAGTGATCAATACATTCAAAACTTTAAAGCAATTACTTTCGATTCAGTCCCTGAAATAGGTGTAACTCGTGAGGCAGATGTTACAAGTTTTCCAGTAGAATCAGGATCGGATGTAAGTGACCACGTTCAAATAAAAAACAACAGATTTAAACTTTCAGGTATAATTACCGAAACACCAATTCGGCTTATGCGAGATCAATTATACAGTGCAGGTGTAAATGGTGCAAGGATTTCTCAAGCAATAGAGTATCTAGATCAAATATTTGAGTCAAGACAACCAATAGTTCTTTTGACAGAACACAGAACTTTTGAAAATGTTATTCTCAAAGGTTATTCGTATGATTATAAATCTGAATTTGCTATGCAATTTGATTTAGAGTTTGAACAAATCCGTCTCGTTTCTAAGGCCACTACTAACGCTATTGCTGTAAAAACAGCACCAAATAAGTCAACTGGTGGTGATGTGAAAGGTCAAGTTCCATCTGGCGGTCCTAAAGTGGATAACCCAATTACAAGAAACACTGCTTCATCTACTGGAACACCAACTAATACGGGGAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f47ed586e09da11453929d5931165a22ba662d06e41cec561f8853a6da688088
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7284
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50