Protein

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Genbank accession
YP_001469060.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,83
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAKNNYKPSREDKFNRARNDYNYGNGFNSRGLAPAYLGADSLPQAVSDVHWSEHGLAKRIDDLELEVNDININISNDQINEDQVINDIGQLTIGGGESLTNYSGYLTKVLTTRPRIFADSFEDETYMQANDRLRGFTTNYQWIAYNEDSINSKGKLDKLIDYTFITDTHVEDKSNSRYVYKGQIRLPQLGTMKRIFVTQIGNNIVVRYLLSSTIPNGDVVGYTGTIVREEYDFKGNQVSKANESIAHTPLILLGAFNADSNDDSDYIQYISTDYKLIQNYDSNDLIIGPLPSDVIDMIDPVNELVSDSKVAYIMTYDNKGHLKFPLKGFTLLDVIKDDIYKKSETDEDSDEPIIDKTGKASLVEGKEYANLHRKFATVEFTFDSELMKKFVSITPRVSTKRLKVDKFDQQMWNEGGFYTEVYDSEVDDTTKDYLYPAASHIFYMADSLAWPDTDWFADTMFEYHTDSPSPFSFFRERDYMEFSKITFNSGMRKIYPEIQQDFGIGDVPFTIDFDWSKATEEVTVHLVKPFKLMRYLREKGNNTLVGGKAVAVNTRLGYTVTQNSDAVIDAANTNILAVYNKLDFVMPVHKEAHNYVSLQPNYNSNAYLHQFVRYQVVSPMPNETTGKSIFDNADSVTRLTYFDTRGSQTIDLTSLTGAFINNSNFDEQFGDIVGSANAVSPGSTNDFLYNLTNSRFIFTSNDKYKDLPFMYTSEGAYGSTLNHTFMLTNNQDSKGMTQILCVTESNADNVVSSLMFRRTVRKSGNAVSGVSAWLGSGHVQWVQESGLTTPPSGKTGKDIFQVMNTTGIYHLAEEVTPVTAFPNTSPSTGNTNIGDWAGQYVGTAQPKHAVFANAKDVRFEVYNAKDGLRHVMLTVTDALGKSMTYHNVAKATGKTSDGVNLDATVDNTSGGYTYVLDKWLPGAYVGDNDNPLPPDLNVGDKDNWGEIALSELIRSRKPEGYDSAYPDLPARLDQQIGKTTDFRSFEQDKSFMTRVYNESAERGVNVKWFGAKGDGIANDTNSIQNAINHVNSIGGGTVLIPIGTYLHDGLISYTGVSIIGESWKNTLLKNISIDTDSISIQGSGYLWPEQYKIANLHLTSDIVVKDMRKGINNYINRFFRYENLKITNHGTGLYERGSWYSEHIGINISNCDIGIMIPAYSIPGTPNSFTDCSIISCRIGLLVEPGVDTIVWRGGHIGGCSEKAIYLDSTKSYNMRNLSFDSVNIEGNLGSEDVTIGYASGDKTNGYIHNVIFTNCRFAQWNVIPNKVGVAINYGSEIITLINCYFIGYTTCVVDTSTFANGQTLIENCGMTNSSNGFNLRGNIGEFSSINGHYRKKYFSYPTAIENISSILTVHDNSAILFAEKNGNNVKIGLSITSEIPAFSDLVIFSNNAYMRALDVVLPGGQYPLSSYFASKRIKNRTKLPSETYLLIDYFVN
Physico‐chemical
properties
protein length:1437 AA
molecular weight: 160381,10540 Da
isoelectric point:5,14520
aromaticity:0,11134
hydropathy:-0,37307

Domains

Domains [InterPro]
Coil
Unmapped
60–80
Coil IPR012334
IPR011050
STR
1000–1325
IPR011050
IPR024535
ENZ
1004–1073
IPR024535
YP_001469060.1
1 1437
Architecture
STR
STR 989-1340 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_001469060.1
1 1437
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9418
Central domain 139 604 467 0,6564
C-terminal 605 1437 832 0,1311
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-604
C-terminal
605-1437

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage KSY1
[NCBI] 		2913972 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001469060.1 [NCBI]
Genbank nucleotide accession
NC_009817.1 [NCBI]
CDS location
range 37205 -> 41518
strand +
CDS
ATGGCTAAAAACAACTATAAACCTTCTAGAGAAGATAAGTTTAATAGAGCAAGAAATGACTATAACTATGGAAATGGTTTTAATTCTAGAGGATTGGCTCCAGCCTACTTAGGTGCTGACAGTTTACCTCAAGCAGTATCTGATGTCCACTGGTCTGAACATGGCTTAGCTAAACGTATTGATGATCTAGAACTTGAAGTAAATGATATTAATATCAACATTAGTAATGACCAAATTAATGAAGATCAAGTAATCAATGACATTGGTCAACTTACTATTGGTGGTGGAGAAAGTCTTACTAACTACTCTGGCTACTTAACAAAAGTACTAACTACTCGTCCTCGTATCTTTGCTGATAGCTTTGAAGATGAAACATATATGCAAGCTAATGATAGACTTCGTGGGTTTACTACAAACTATCAATGGATTGCTTACAATGAAGACAGCATCAATAGTAAAGGTAAACTTGACAAGCTAATTGACTATACTTTCATTACTGATACTCATGTAGAAGACAAAAGTAATTCTCGTTATGTATATAAAGGTCAAATCAGACTTCCACAACTTGGAACAATGAAACGTATCTTTGTTACACAAATTGGAAACAACATTGTTGTACGTTACTTATTATCAAGCACAATTCCTAATGGAGATGTTGTAGGATATACAGGTACAATTGTACGTGAAGAATATGACTTCAAAGGGAATCAAGTATCTAAAGCTAATGAGTCTATTGCTCATACTCCTTTAATTTTACTTGGTGCATTTAATGCAGATTCAAACGACGATTCAGACTATATTCAATATATTTCTACAGACTACAAACTCATTCAAAACTATGATAGTAATGACTTAATCATTGGCCCATTGCCTTCTGATGTTATTGACATGATTGACCCAGTTAATGAATTGGTATCTGACTCTAAAGTAGCATACATAATGACGTATGATAATAAAGGTCATTTAAAATTCCCACTTAAAGGTTTCACTCTTCTTGACGTTATCAAAGATGACATCTATAAAAAATCTGAAACTGACGAAGATTCTGATGAACCTATCATTGACAAAACAGGTAAAGCATCATTAGTAGAAGGCAAAGAGTATGCTAATCTTCATCGTAAGTTTGCTACTGTTGAGTTCACATTTGATTCTGAGCTTATGAAGAAATTTGTAAGCATCACTCCTCGTGTATCAACTAAACGTCTTAAAGTAGATAAGTTTGACCAACAAATGTGGAATGAAGGTGGGTTCTATACTGAAGTATATGATTCTGAAGTAGATGATACTACTAAAGATTATTTATACCCAGCAGCTTCTCACATCTTCTACATGGCTGATAGCTTGGCATGGCCTGATACTGATTGGTTTGCAGACACAATGTTTGAATACCACACAGATTCACCATCTCCATTCTCGTTCTTCCGTGAACGTGACTATATGGAATTTTCAAAGATTACTTTCAACTCTGGTATGCGTAAAATCTATCCAGAAATTCAACAAGACTTTGGAATTGGTGACGTGCCATTTACTATTGATTTTGACTGGTCTAAAGCAACAGAAGAAGTTACTGTTCACTTAGTAAAACCTTTCAAACTTATGCGTTATTTGCGTGAAAAGGGAAATAATACATTAGTTGGAGGTAAAGCAGTAGCAGTAAATACTCGTCTTGGGTACACTGTAACTCAAAACTCTGATGCTGTAATTGATGCTGCTAATACTAACATCTTGGCAGTCTACAATAAATTGGACTTTGTAATGCCTGTACATAAAGAAGCACATAACTATGTATCATTACAACCTAACTACAACAGCAATGCTTACTTACATCAGTTCGTAAGATATCAAGTTGTATCTCCAATGCCAAATGAAACTACAGGAAAATCTATCTTTGACAATGCTGACTCAGTAACTCGTCTTACATATTTTGATACTCGTGGTTCTCAAACAATTGACTTAACAAGTCTTACTGGTGCATTTATAAACAACAGTAACTTCGATGAACAGTTTGGAGATATTGTAGGTTCAGCTAATGCAGTGTCACCAGGAAGTACTAATGACTTCTTGTACAACTTGACTAACTCTCGTTTCATCTTTACTTCAAATGATAAATACAAAGATCTACCATTTATGTACACAAGTGAAGGAGCTTATGGTAGTACTTTGAACCATACTTTCATGTTGACTAATAATCAAGATAGTAAAGGTATGACTCAAATTCTTTGTGTAACAGAATCTAATGCAGACAATGTAGTATCAAGTTTGATGTTTAGACGTACAGTAAGAAAGTCAGGTAATGCTGTATCTGGAGTATCTGCATGGTTAGGTTCTGGTCACGTTCAATGGGTTCAAGAGTCTGGACTTACTACTCCTCCTTCTGGTAAAACAGGAAAAGACATCTTCCAAGTAATGAATACTACTGGTATCTATCACTTGGCTGAAGAAGTAACTCCTGTCACAGCATTCCCTAATACATCTCCTTCGACAGGCAACACTAACATTGGTGATTGGGCTGGACAATATGTAGGAACTGCTCAACCTAAGCATGCAGTATTTGCAAATGCTAAAGATGTAAGATTTGAAGTATACAATGCTAAGGATGGCTTACGCCATGTTATGCTTACAGTAACTGATGCATTAGGTAAGTCTATGACTTATCATAATGTGGCTAAAGCTACAGGTAAAACATCTGATGGTGTCAACCTTGATGCAACTGTAGACAATACTTCAGGTGGCTATACTTATGTATTAGACAAATGGTTGCCAGGAGCATATGTTGGTGATAATGACAACCCATTACCACCAGACCTTAATGTTGGAGACAAGGATAACTGGGGCGAAATCGCGTTATCTGAATTGATACGGTCACGGAAACCAGAGGGGTATGATTCGGCGTATCCAGACCTGCCGGCTAGGCTAGATCAACAAATCGGTAAAACCACTGATTTTAGGTCTTTTGAACAGGACAAATCGTTTATGACTAGGGTTTATAATGAATCAGCAGAACGAGGAGTGAATGTCAAATGGTTTGGAGCTAAAGGAGACGGAATAGCTAATGATACTAATTCTATACAAAATGCTATAAATCACGTAAACTCAATTGGCGGTGGGACTGTACTTATACCAATAGGCACGTACCTACATGATGGGTTGATTTCTTATACCGGCGTTTCTATTATTGGCGAAAGTTGGAAGAACACCTTACTCAAAAATATTAGCATAGATACGGATAGTATTTCTATTCAAGGGTCTGGGTATTTGTGGCCGGAACAATACAAGATAGCTAACCTACACCTTACATCTGACATTGTCGTAAAAGATATGCGTAAGGGTATAAACAACTATATAAACAGATTTTTCCGATATGAAAATCTTAAAATAACCAATCATGGTACTGGATTATATGAAAGAGGTTCGTGGTATTCAGAACACATTGGTATAAACATCTCAAATTGTGATATCGGTATAATGATTCCAGCATACTCTATCCCCGGAACGCCTAACAGTTTTACAGATTGCTCTATAATTTCTTGTCGTATAGGATTGTTAGTCGAACCAGGCGTGGATACCATTGTGTGGAGAGGTGGTCATATAGGCGGATGCTCTGAAAAAGCAATTTACTTAGATAGTACCAAAAGTTATAATATGCGAAATCTCTCATTTGATTCGGTTAATATAGAAGGTAACTTAGGTTCGGAAGATGTTACGATCGGTTACGCTTCAGGTGATAAAACTAATGGCTATATTCATAACGTCATTTTTACTAACTGTCGTTTTGCTCAATGGAATGTTATACCAAATAAAGTAGGAGTGGCGATAAATTATGGTTCTGAAATTATCACTCTGATAAATTGTTACTTTATCGGTTATACAACTTGTGTTGTTGACACCTCTACATTTGCAAATGGTCAAACGCTGATTGAAAACTGTGGTATGACTAACTCATCGAACGGGTTTAATCTTAGAGGTAACATCGGGGAATTTTCTTCTATAAACGGGCATTACCGGAAAAAGTATTTTTCATATCCAACGGCAATAGAAAATATTTCAAGTATTCTTACAGTTCACGACAATTCAGCGATACTGTTTGCGGAAAAAAATGGTAATAATGTTAAAATCGGTTTGAGTATTACCTCAGAAATTCCAGCATTTTCTGACCTTGTTATTTTTTCTAATAATGCTTACATGAGAGCATTGGATGTAGTTTTACCAGGTGGACAATATCCTTTATCTTCTTATTTTGCCTCCAAAAGAATAAAAAACAGAACTAAACTTCCGTCAGAAACATACTTGCTCATTGATTATTTTGTTAATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d8b979836bfdd9e78e2f74d3ce1eef02998aa62ee622097a0543829bcb28599e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3780
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50