Protein

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Genbank accession
YP_009799365.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRVGGAYESVARGVSEQAPQDRRSGQMWEQVNMISDPVRGIVRRQGSEYKASIRIGASVKDVYQLEQVAPNFITKTYFCDGDEYELIYTRHKKSEREPLSPLYCYNKTKNKFLTVKPDNGAVWNAILNNGISSMVNIGKFMFISANGYTGEWQIKDSIPSDESSKSGAIWIRNGDYSRTYALLIVMQDGTQKKVEYKTPTSSYPGELDTSQVKVPEIKTDDNPSNEELNKRLAVFQQEMSEYNKKVADIQNEYNSAVTKYTGESAAAIQPENIAKQLRDQIVKVIPQQHVGQQGAYIYFSENSGIRSVSVEDMGDDSYLRVVVNNIDGPEKLTPKHYVGKIVRVTPKKQTGKDAYYLKAFPKSGMGSGFTDVTWREAAGQESIPKQFFALCYAVGDVLHVGSTPESLQSSIGSSITIPKFKVSTVGDTTSSPLPSFFGKQIDYLGVFQDRLLIGTGAIIFASKPGDYFNWFRSSVLTVEDNDPVEMFALGSEDDTISWDTTFDRNHVLFGRKYQYLIPGRTLLSPKNPSIQVMSANEDAVEAEPQSSGNFVFYAKDTARKGSLHQIQMGATADSSESYECSQQLDKYIWGKPTQILCTTAPFVVVMRTRRYPYGLYLYTYLDSMQGTERLFDSWSRWEWHTKLGPSVGMSKYRGDVLVFTVRNSGNDLHLVCDLFTFDTSLSNYPYLDSWRHFNVATQYPLWWTREFDECMYVAYNALSKYYMLGSEYKKLDNNIPDWKQDIDKLTIGVEFSAYYTPTSPYKRDYNDKPVLNGRLTWQTILLSIMETGGVSVIVEFSNNTRVQKQFDGRTLGRGTNLVGRAPIVTTTVNAPVGREIRECKVTVAANKWLPLTVTGMEWTGQWFNRRRG
Physico‐chemical
properties
protein length:868 AA
molecular weight: 98174,49950 Da
isoelectric point:7,49800
aromaticity:0,11636
hydropathy:-0,47281

Domains

Domains [InterPro]
DC_0058
STR
1–868
DC_0058
IPR058003
TTP
7–55
IPR058003 IPR058003
Coil
Unmapped
225–259
Coil
YP_009799365.1
1 868
Architecture
STR
STR 1-868
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009799365.1
1 868
Domain Start End Length (AA) Confidence
N-terminal 1 162 162 0,8840
Central domain 163 361 200 0,1958
C-terminal 362 868 506 0,2257
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-162
Central
163-361
C-terminal
362-868

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SpuP_Spp16
[NCBI] 		2081603 Uroviricota > Caudoviricetes > Autographivirales > Melnykvirinae > Panjvirus
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009799365.1 [NCBI]
Genbank nucleotide accession
NC_047941 [NCBI]
CDS location
range 26011 -> 28617
strand +
CDS
ATGCGAGTAGGTGGTGCTTATGAATCAGTAGCACGTGGTGTTTCAGAGCAAGCACCACAGGATAGACGCTCAGGTCAGATGTGGGAGCAGGTAAACATGATTAGTGACCCTGTTCGAGGTATTGTACGTAGACAGGGGAGCGAATATAAAGCATCTATTCGTATAGGTGCATCAGTAAAAGATGTGTATCAGTTGGAGCAAGTAGCGCCTAACTTCATTACAAAGACTTATTTCTGTGACGGTGATGAGTATGAGTTAATTTACACACGTCATAAGAAGTCAGAGCGTGAGCCACTATCTCCACTATATTGTTACAATAAAACAAAGAATAAATTCCTTACAGTTAAACCTGATAATGGGGCTGTATGGAACGCCATATTAAACAACGGTATTTCCAGCATGGTTAACATCGGTAAGTTCATGTTTATATCGGCTAATGGTTATACTGGTGAATGGCAGATTAAGGACTCCATACCGTCTGATGAATCATCTAAATCAGGTGCTATATGGATTCGTAACGGGGATTACTCCCGTACATACGCGTTACTCATTGTGATGCAAGATGGTACTCAGAAGAAGGTTGAGTATAAGACACCGACATCAAGTTATCCCGGAGAATTGGACACATCACAGGTTAAAGTACCGGAGATTAAGACTGATGACAACCCAAGTAATGAGGAGTTAAACAAACGTCTGGCTGTATTCCAGCAAGAAATGTCAGAGTACAATAAAAAGGTAGCTGACATTCAGAATGAGTATAACTCAGCAGTTACTAAGTACACAGGTGAATCAGCAGCCGCTATACAACCTGAGAACATTGCTAAGCAACTACGTGACCAAATAGTTAAGGTTATACCTCAACAGCATGTAGGGCAGCAGGGTGCTTATATTTACTTCTCAGAGAATTCGGGAATACGTAGTGTATCTGTAGAAGATATGGGTGATGACAGTTATTTACGTGTAGTTGTAAATAATATAGATGGCCCTGAGAAGTTAACTCCTAAGCATTATGTTGGTAAGATAGTGCGTGTAACTCCTAAGAAACAGACAGGTAAAGATGCTTATTACTTAAAGGCATTTCCTAAGTCAGGTATGGGGAGTGGTTTTACTGATGTTACATGGCGTGAAGCGGCAGGTCAAGAGTCTATACCTAAACAGTTCTTTGCTTTATGTTATGCTGTAGGTGATGTACTACACGTAGGTTCTACACCAGAATCATTACAATCATCTATTGGTAGTTCTATTACGATACCTAAGTTTAAAGTATCGACTGTAGGTGATACAACAAGTTCACCATTACCATCTTTCTTTGGTAAACAGATAGATTACTTGGGTGTATTCCAAGATAGACTACTGATTGGTACAGGTGCGATTATATTTGCTAGTAAGCCCGGAGACTACTTTAACTGGTTCCGTTCATCAGTGCTTACTGTAGAAGATAACGATCCTGTAGAGATGTTTGCTTTAGGTTCGGAGGACGATACAATATCATGGGACACTACGTTTGATAGGAACCATGTATTATTCGGTAGAAAGTATCAATACTTAATACCCGGACGTACACTACTATCACCGAAGAACCCTAGTATACAGGTAATGTCTGCTAATGAGGACGCTGTAGAAGCAGAGCCACAGAGTTCGGGTAACTTTGTGTTCTATGCTAAAGATACAGCACGTAAAGGCTCATTACATCAAATACAGATGGGTGCTACAGCAGATAGCTCAGAATCTTATGAGTGTTCACAGCAGTTAGATAAGTATATTTGGGGTAAGCCTACACAGATATTGTGTACAACGGCACCATTCGTTGTTGTTATGCGCACTCGCAGATATCCTTATGGTTTGTACCTATACACTTACTTGGATTCAATGCAGGGTACTGAGCGTTTATTTGATAGTTGGTCACGCTGGGAGTGGCACACTAAGTTAGGGCCATCAGTGGGTATGTCTAAATACAGAGGTGACGTTCTTGTGTTTACAGTACGTAACTCAGGTAATGATTTACACCTTGTATGTGACTTATTTACATTTGATACATCATTGTCTAATTACCCGTACTTGGATTCGTGGAGGCACTTTAATGTAGCAACACAATATCCGTTATGGTGGACACGTGAGTTTGATGAATGTATGTACGTAGCTTATAATGCACTAAGTAAATACTATATGCTTGGTAGTGAGTATAAGAAGTTAGATAACAATATACCGGATTGGAAACAGGATATTGATAAACTAACAATTGGGGTAGAGTTCTCCGCTTACTACACACCTACATCACCGTATAAACGTGACTACAATGATAAACCTGTTCTTAATGGACGTTTAACTTGGCAAACTATTCTATTATCAATAATGGAAACTGGAGGCGTATCCGTTATTGTAGAGTTCAGTAACAATACGCGAGTACAGAAACAGTTTGACGGACGTACATTGGGAAGGGGTACTAACTTAGTCGGACGAGCACCTATTGTAACAACTACTGTTAACGCACCAGTAGGACGTGAAATTAGGGAGTGTAAAGTAACAGTGGCAGCTAACAAATGGTTGCCTTTAACTGTAACTGGTATGGAATGGACAGGACAATGGTTCAATAGACGCAGAGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1bf07627fbd0fb26999467d51d20d89aac1a7ea78d65ffdb145f2369f987819e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8661
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence analysis of a novel Salmonella phage Spp16 Zhao,F., Sun,H., Ren,H. and Tong,Y. 2019-02-14 — GenBank