Protein

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Genbank accession
QGF19787.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MVTHTFRVFCLVKFNLRRFIMALVSQTTKNLKSGISQQPDILRYPEQGAVQINGWSSETEGLQKRPPLVFSKALGAKGYLGTNPYVHLINRDEFEQYYACFTGTGVKVFDLTGTEYIVRGDTSYVTVANPREDLRMVTIADYTFIVNRSKVVDTLPDVSLPNFREKGSALINIRGGQYGRTLLVYLNDDVNEVAKLELPNGSDPTHVKQTDSQYIAEELAKQIRLKLPTWTITVGTGYVYIESPVGTDIDKFITKDGYADQLIAPVTHFAQSFNKLPANAPDGYIIKIVGDTSKTADQYYVKWDAARKVWGETIGWGSEYKLDPVTMPWALVRAADGNFDLKMNTWTERKCGDEDTNPFPSFVDAKINDVFFWRNRLGFLSGENVILSRTAKYFGFFPTSVANLSDDDPIDVAVSHNRVSTLKYAVPFTEEMLIWADEAQFVMNAQGVLSSRSVELNLTTQFDVYDKARPYGIGRNIYFAAPRATFTSINRYYAVQDVSSVKNAEDMTSHVPSYIPNGVFQIHGSATESYASVLTSGAESKVFLYKFLYQNETLQQQSWSHWDFGDNVRILSAASINSTMFLILENNGHVFMGYVLFTKDTVDYQGEPYRGYLDAKRAFTVPLGAYNEDTNETTVNVSTVYGMSFYKGTISALEGDGRVTSFEEPQGGWSVNPTIAFDGNLEGETIYLGFNFLFTYEFSKFLIKKQAEDGSIASEDTGRLQLRRAWVNYEDSGAFHIEVQNQSRTFEYLMGGARVGSQGLRASQLNVATGQYRFPVNGDARLNTVRIFSDYTTPLNVIGCGWEGNYMKRTTGI
Physico‐chemical
properties
protein length:813 AA
molecular weight: 91291,47790 Da
isoelectric point:5,41377
aromaticity:0,12792
hydropathy:-0,28032

Domains

Domains [InterPro]
IPR058003
TTP
21–813
IPR058003
QGF19787.1
1 813
Architecture
TTP
TTP 21-813
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGF19787.1
1 813
Domain Start End Length (AA) Confidence
N-terminal 1 160 160 0,9929
Central domain 161 367 208 0,2254
C-terminal 368 813 445 0,1207
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-160
Central
161-367
C-terminal
368-813

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage MA6
[NCBI] 		2608323 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium atrosepticum
[NCBI] 		29471 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGF19787.1 [NCBI]
Genbank nucleotide accession
MN327636 [NCBI]
CDS location
range 12953 -> 15394
strand -
CDS
ATGGTGACGCACACGTTCAGGGTCTTCTGTCTCGTTAAGTTTAACCTAAGGAGGTTCATTATGGCCTTAGTATCACAAACAACAAAGAACCTAAAGTCTGGTATCAGCCAGCAGCCGGACATCTTAAGGTATCCCGAACAGGGAGCCGTACAGATTAACGGTTGGTCATCTGAAACCGAAGGTCTCCAAAAGAGACCACCTTTAGTGTTCAGCAAGGCGCTGGGAGCCAAGGGCTACTTAGGCACCAATCCATACGTTCACCTGATTAACCGCGATGAGTTCGAACAGTATTATGCGTGCTTCACAGGGACAGGCGTTAAGGTGTTCGACCTGACTGGCACTGAGTACATCGTCCGTGGTGATACCTCATACGTCACCGTAGCGAACCCCAGAGAGGACTTAAGGATGGTGACCATCGCCGACTACACGTTTATCGTTAACCGCTCCAAGGTGGTCGATACGTTGCCTGATGTGTCCCTTCCAAACTTCAGGGAGAAAGGCTCAGCGCTGATTAACATTCGTGGTGGTCAATATGGGCGTACACTTCTGGTGTATCTCAATGATGACGTTAATGAGGTTGCTAAGCTGGAACTGCCCAACGGTAGCGACCCGACTCACGTTAAGCAGACAGACTCACAGTACATCGCTGAGGAACTCGCTAAGCAGATTCGCCTTAAGTTGCCCACTTGGACAATCACAGTAGGGACTGGTTACGTCTACATTGAGTCGCCAGTTGGTACGGATATCGATAAGTTCATCACTAAGGATGGTTACGCTGACCAATTGATTGCCCCTGTAACTCACTTTGCGCAGTCATTCAATAAGCTCCCAGCGAATGCACCTGATGGCTACATTATCAAAATCGTGGGGGACACCTCTAAGACTGCCGACCAGTATTACGTTAAGTGGGATGCTGCGCGTAAGGTATGGGGTGAAACTATTGGCTGGGGGTCTGAATACAAGTTAGACCCTGTGACCATGCCTTGGGCGTTGGTGCGAGCAGCTGATGGTAACTTCGACCTTAAGATGAACACTTGGACTGAACGTAAATGTGGTGATGAGGATACCAACCCATTCCCATCGTTTGTAGACGCCAAGATTAACGATGTGTTCTTCTGGCGTAACCGCTTAGGGTTCCTTAGTGGTGAGAACGTTATTCTGTCTCGTACAGCCAAATACTTTGGTTTCTTCCCAACGAGCGTAGCGAACCTTAGCGACGATGACCCGATTGATGTGGCGGTCAGTCACAACCGAGTGTCAACCCTTAAGTACGCCGTTCCGTTCACTGAGGAGATGCTTATCTGGGCTGACGAAGCGCAGTTCGTTATGAACGCTCAAGGTGTCCTGTCCAGCCGTAGCGTTGAGTTGAACCTTACGACTCAGTTCGATGTGTACGATAAGGCGCGACCTTATGGCATTGGTCGTAACATCTACTTTGCGGCTCCTCGAGCAACCTTTACAAGTATCAACCGATACTACGCTGTTCAGGATGTGTCCAGTGTGAAGAACGCCGAGGATATGACCAGTCATGTACCAAGCTACATCCCTAACGGTGTCTTCCAGATTCACGGGTCGGCTACTGAGAGTTACGCTAGTGTGTTGACTTCTGGTGCTGAGTCTAAAGTTTTCCTCTATAAGTTCCTCTATCAGAATGAGACGTTGCAGCAGCAGTCTTGGTCTCATTGGGACTTTGGGGATAACGTTAGGATTCTCTCAGCGGCCTCCATTAACTCTACGATGTTCCTTATCTTAGAGAACAATGGTCATGTCTTTATGGGCTACGTCCTGTTCACTAAGGACACCGTAGATTACCAAGGAGAACCGTACCGTGGTTATCTGGACGCTAAGAGAGCCTTCACGGTGCCTTTAGGTGCCTACAATGAGGATACCAATGAGACCACTGTGAACGTCTCTACGGTGTACGGGATGAGCTTCTACAAGGGCACTATCAGCGCACTTGAAGGAGATGGTCGTGTGACCTCCTTTGAGGAACCACAGGGAGGATGGTCGGTCAACCCTACGATTGCCTTTGATGGTAACCTTGAGGGTGAGACGATTTACCTTGGGTTCAACTTCCTGTTCACTTATGAGTTCTCTAAGTTCCTCATTAAGAAGCAGGCTGAGGATGGTTCTATCGCCTCAGAGGACACTGGTAGATTGCAGCTAAGGCGTGCATGGGTGAACTATGAGGACTCTGGAGCGTTCCATATTGAGGTACAGAATCAATCGCGAACCTTTGAGTATCTCATGGGTGGTGCCCGTGTAGGGTCGCAAGGCCTCCGAGCGTCACAACTCAACGTGGCTACTGGTCAATATCGATTCCCTGTCAATGGGGATGCACGGTTGAACACAGTGAGAATCTTCAGTGACTACACAACGCCACTCAACGTTATCGGGTGTGGTTGGGAAGGTAATTACATGAAGAGAACCACGGGTATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ce3547107b6f101304c27a1a3e9329c7295fb6cbbcd1d221a400c85c0d6a7bd0
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2931
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage-based cocktail containing Podoviridae and Myoviridae bacteriophages inhibit growth of Pectobacterium spp. under in vitro and in vivo conditions Zaczek-Moczydlowska,M.A., Young,G.K., Trudgett,J., Plahe,C., Fleming,C.C., Campbell,K. and OHanlon,R. 2020-04-02 — GenBank