Protein

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Genbank accession
XAO54578.1 [GenBank]
Protein name
hinge connector
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MEKFMAEFGQGYVQTPVISENNAVKFKMSIAGSCTLSTVKSYIKFQDERIGPTTFGNGLTLLEIDTTTNKIVNTKNYSLTSTHDVISQALITFVESVPAGRLIAFISSGKLNASQTLIDWFRKCGSRAFPEKWLIDKVDTSYSAFYITGRNVIVSEHVKYNDGKLVEDVSTPLEVVYDTFSDIGATGYPVRITEDESTYSSTGDGTSTTIKRFPTEDLVTPMDTYNLLPLDVLYLKFQMSFDAALKAAGTVRTSVRFFKSPSTAPISNTNIDIAANVPAGAWASFERYVEIPEGADGFTVVTSRTVATGTGSIRNIVIGEITRGDSAFKPAEFGVNGIRMSYANDATNTGNTIVTFPDAQAPRAGKIYAAELREKQ
Physico‐chemical
properties
protein length:376 AA
molecular weight: 40996,71740 Da
isoelectric point:5,33061
aromaticity:0,10106
hydropathy:-0,12872

Domains

Domains [InterPro]
DC_0912
STR
1–376
DC_0912
PS52031
LEC
22–192
PS52031
IPR039477
STR
57–128
IPR039477
XAO54578.1
1 376
Architecture
STR
STR 1-376
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAO54578.1
1 376
Domain Start End Length (AA) Confidence
N-terminal 1 56 56 0,3982
Central domain 57 255 200 0,4027
C-terminal 256 376 120 0,9035
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-56
Central
57-255
C-terminal
256-376

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage vB_YenM_P8
[NCBI] 		3141560 Viruses >
Host Yersinia enterocolitica
[NCBI] 		630 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAO54578.1 [NCBI]
Genbank nucleotide accession
PP693301 [NCBI]
CDS location
range 130021 -> 131151
strand -
CDS
ATGGAAAAATTTATGGCAGAGTTTGGACAAGGATATGTCCAAACGCCAGTTATATCAGAAAATAATGCCGTTAAATTTAAAATGAGTATAGCAGGGAGCTGTACTCTTTCCACGGTGAAATCGTATATCAAATTTCAAGATGAACGAATCGGACCAACCACTTTTGGTAATGGTCTGACTTTATTGGAAATTGATACAACTACGAATAAAATTGTTAACACAAAAAACTATTCATTAACCAGCACACACGATGTAATCAGTCAGGCATTAATTACCTTCGTGGAATCTGTTCCAGCCGGAAGATTGATTGCTTTTATTTCTTCAGGGAAACTAAATGCTTCGCAAACATTAATTGATTGGTTCCGTAAATGTGGTTCAAGAGCATTCCCAGAGAAATGGCTGATTGATAAAGTTGATACATCATACTCGGCCTTTTATATAACCGGTCGGAATGTAATTGTTTCGGAGCATGTTAAGTATAATGACGGGAAGTTAGTTGAGGATGTTTCGACTCCGCTTGAAGTCGTTTATGATACCTTTAGTGATATAGGAGCAACAGGCTATCCTGTGCGCATAACGGAAGACGAGAGCACGTATTCATCAACAGGTGATGGAACATCAACCACCATTAAAAGGTTCCCCACAGAGGACCTGGTGACTCCTATGGACACCTATAACCTTTTACCTTTGGATGTGCTTTACTTGAAGTTTCAGATGTCATTTGACGCTGCACTGAAAGCCGCCGGAACTGTAAGGACTTCGGTTCGATTCTTTAAAAGCCCCAGCACCGCCCCAATATCAAATACAAACATTGATATCGCAGCGAACGTTCCAGCTGGTGCATGGGCGAGTTTCGAAAGATATGTTGAGATTCCGGAGGGAGCCGATGGCTTTACAGTAGTAACATCAAGGACTGTAGCTACTGGAACCGGGTCAATACGTAATATTGTTATTGGTGAGATAACCAGAGGCGACTCGGCATTCAAACCAGCTGAATTTGGTGTCAATGGCATAAGGATGTCATATGCAAACGATGCAACAAATACAGGTAATACAATTGTAACATTCCCGGATGCACAAGCTCCGAGAGCCGGCAAGATATACGCAGCCGAACTACGAGAAAAACAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
c91142ef695e5de2a9942461f9d275808b47d031208803acc438241dd32e0bcc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7144
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of Yersinia phage vB_YenM_P8 Hammerl,J.A. 2003-08 — GenBank