Protein

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Genbank accession
YP_009007896.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,98
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,56
Protein sequence
MSQLNVTAVTASGYLEAVKTMTASLGFQLPSFTTAARPASTNEGVMIFNSTENTIQVYNGSAWQDLASATELDTWAGTGARPASPSVGDLGLNTTDNKLEVYAGIDVETNAASWILHGSSPIGSSSDNPAQSARLAAADGLAEATIWITIGSTAYQTQFDPTDRYGDGRVGWAKIDNVFFGANNSTISHTEYGSPSTSIPAWNNNSTTSTSNDTISTGKMRVGREQSHSPSGNNSLSTLRFTLPKLTAARYTGAHQSGGSDTADFGGFTQNFNGIRNNSPYENNGSGYWVVIWSGGTTNFSTDMLIMDDGNRGSGNQSFTSTSSVVSYSTETTNDPVIIWGTTDAYNEYMYVNSFELWVH
Physico‐chemical
properties
protein length:360 AA
molecular weight: 38308,02710 Da
isoelectric point:4,50241
aromaticity:0,10000
hydropathy:-0,39167

Domains

Domains [InterPro]
DC_0326
STR
1–79
DC_0326
DC_1195
RBD
67–360
DC_1195
YP_009007896.1
1 360
Architecture
STR
RBD
STR 1-79 | RBD 80-360
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009007896.1
1 360
Domain Start End Length (AA) Confidence
N-terminal 1 31 31 0,5688
Central domain 32 230 200 0,0119
C-terminal 231 360 129 0,9817
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-31
Central
32-230
C-terminal
231-360

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-MbCM100
[NCBI] 		1340812 Uroviricota > Caudoviricetes > Pantevenvirales > Acionnavirus > Acionnavirus monteraybay
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009007896.1 [NCBI]
Genbank nucleotide accession
NC_023584 [NCBI]
CDS location
range 31418 -> 32500
strand +
CDS
ATGTCTCAATTAAATGTAACTGCCGTTACTGCTAGTGGATACCTTGAAGCAGTCAAAACGATGACTGCTAGTCTTGGATTTCAGTTGCCATCATTTACAACTGCTGCGAGACCTGCATCTACAAATGAAGGCGTGATGATATTTAATTCAACAGAAAATACTATTCAAGTGTATAATGGATCTGCATGGCAAGATCTTGCTAGTGCTACTGAACTTGATACTTGGGCAGGAACTGGCGCAAGACCTGCTTCACCTTCTGTTGGTGATTTAGGATTAAATACTACTGATAACAAACTAGAAGTTTATGCTGGAATTGATGTAGAAACTAATGCTGCTAGTTGGATACTACATGGTTCATCTCCAATAGGAAGTTCTTCTGATAATCCTGCTCAGTCAGCAAGACTTGCTGCTGCGGATGGTCTTGCCGAGGCAACTATTTGGATTACTATTGGTTCTACAGCGTATCAAACTCAATTTGATCCAACTGATAGATATGGTGATGGTAGAGTAGGTTGGGCAAAGATCGATAATGTTTTCTTTGGTGCTAATAACTCAACTATTTCTCATACTGAGTATGGATCACCAAGCACATCAATCCCAGCATGGAATAATAACAGTACCACCAGCACAAGTAACGATACTATTAGCACAGGTAAAATGAGAGTTGGGCGAGAGCAGAGTCATTCGCCAAGTGGTAATAACTCTCTATCTACACTTAGATTTACTTTACCCAAATTAACTGCTGCAAGATATACAGGTGCTCACCAATCGGGAGGTAGTGATACTGCTGACTTTGGTGGTTTCACTCAAAATTTTAATGGTATTAGAAATAACTCCCCATACGAGAATAATGGATCTGGTTATTGGGTCGTGATTTGGTCTGGTGGTACTACTAATTTTAGTACGGATATGTTAATTATGGACGATGGTAACAGGGGTAGTGGCAACCAAAGTTTTACTAGTACATCATCAGTTGTAAGTTATTCAACTGAAACTACTAATGATCCAGTGATAATCTGGGGAACAACTGACGCATATAACGAATATATGTACGTCAATAGTTTTGAACTTTGGGTTCATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
616ca464e8b2b3a910437d8a103d7a636465ce99d38eb9bb36e6d2b45bf6b04c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4751
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50