Protein

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Genbank accession
AFH19800.1 [GenBank]
Protein name
putative tail fiber
RBP type
TSP
Evidence DepoScope
Probability 0,88
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MVLRPVLVGGLPGCVNLPSNDDCQCWPLWSSDNAYSFGDVVQQGGVLYTANRDIPPGTPFLAGDWTVYTPGATLVPPHREDASYQQYQAVNFNDKLYTARTDLPPGPFDPANWQEISVEGLVEVADSSTIDFSGDGSASDPLTAAVKLDPVAGNLITATPDGLVLLASGIPFPDPSSVNISDNVTLRVDEVTGDDATADGSLQKPYKTIVAAIGASNAGDNIEVYPGSYAGNFAPKSDTTVTGRGFVYVDGNVTIGAAVSGVTVSGLFIDGNLTIAGANGTVEFINTTVSTSIIGTGNNTGWFLFDEVNADSVSITGAGTGEFIFRGGIEQTDFSLNAPSKLLVENRSRVGVVNHLNGLMILKDIGVIVSLTSTAEDNAFTFLAVISSSLFDPDPRTYGALTKTGSCSYAFQDFARSNMAETVTGAKWLVSNGRDIHGNYDPNFYALPNGQSLNSHFEGIDNALQTLQEYSPLGRSVAVDFGFSIIGGWSADETVGVHAVSHETVIPSNMAGSIMVTDSSTLDGVLNVMVGTSVVGTVTITDGAAVFASSEFNLDPGQLVRIVSTSEGTFEYVGLTLVGHRQVVYVD
Physico‐chemical
properties
protein length:587 AA
molecular weight: 61521,50680 Da
isoelectric point:4,16149
aromaticity:0,08688
hydropathy:0,07462

Domains

Domains [InterPro]
IPR036573
STR
20–51
IPR036573 IPR012334 DC_1915
cd12215
STR
27–66
cd12215 IPR012334
G3DSA:2.10.10.90
STR
27–116
G3DSA:2.10.10.90 IPR011459
DC_1512
ATT
43–185
DC_1512 IPR011050
AFH19800.1
1 587
Architecture
STR
ATT
STR
STR
STR 20-42 | ATT 43-185 | STR 186-350 | STR 391-587
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFH19800.1
1 587
Domain Start End Length (AA) Confidence
N-terminal 1 232 232 0,9482
Central domain 233 479 248 0,8929
C-terminal 480 587 107 0,8364
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-232
Central
233-479
C-terminal
480-587

Taxonomy

  Name Taxonomy ID Lineage
Phage Agrobacterium phage 7-7-1
[NCBI] 		1161931 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Agrobacterium sp. H13-3
[NCBI] 		861208 Bacteria > Proteobacteria > Alphaproteobacteria > Rhizobiales > Rhizobiaceae > Agrobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFH19800.1 [NCBI]
Genbank nucleotide accession
JQ312117 [NCBI]
CDS location
range 49601 -> 51364
strand +
CDS
ATGGTCCTTCGTCCTGTCCTTGTCGGCGGTCTTCCGGGTTGCGTAAACCTGCCGTCGAACGATGATTGCCAGTGCTGGCCCCTGTGGTCATCCGACAACGCCTATTCGTTCGGTGACGTCGTTCAGCAAGGAGGCGTTCTATACACCGCAAACCGGGATATTCCCCCCGGCACGCCGTTCTTGGCAGGTGACTGGACTGTTTACACTCCGGGTGCGACCCTTGTTCCTCCGCACCGCGAAGACGCAAGCTATCAGCAATATCAGGCGGTGAACTTCAATGACAAACTTTATACGGCGCGGACAGATTTGCCGCCCGGTCCGTTTGACCCTGCCAATTGGCAAGAAATTTCCGTCGAAGGTCTCGTTGAAGTCGCCGATAGCTCGACGATAGATTTCAGTGGTGACGGTTCTGCATCTGACCCGCTGACCGCTGCCGTCAAGCTTGACCCGGTCGCCGGGAACCTCATCACCGCGACACCTGACGGCCTTGTTTTGCTTGCATCTGGCATTCCGTTTCCCGATCCTTCAAGCGTCAATATCTCCGACAATGTTACGTTGCGCGTTGACGAAGTGACCGGTGACGACGCAACCGCCGACGGGTCGCTTCAGAAACCGTACAAGACCATCGTCGCCGCAATCGGCGCGTCGAACGCTGGCGACAATATCGAGGTTTACCCCGGCAGCTACGCGGGTAACTTCGCGCCAAAGTCCGACACTACGGTAACAGGGCGCGGTTTCGTCTACGTTGACGGTAATGTCACAATCGGCGCGGCTGTTAGCGGCGTGACGGTCTCTGGCCTGTTTATCGACGGCAATTTGACGATTGCCGGTGCGAACGGAACGGTCGAGTTCATCAACACTACCGTAAGTACCTCAATCATCGGCACCGGCAACAATACCGGATGGTTCCTGTTCGACGAAGTCAACGCAGATAGCGTCAGCATCACGGGTGCAGGAACCGGAGAGTTCATTTTCCGGGGCGGTATCGAACAAACTGACTTTTCCTTGAACGCACCGTCAAAGTTGCTTGTCGAAAACAGGTCGCGCGTCGGCGTCGTCAATCACCTGAACGGTTTGATGATCCTGAAGGATATCGGCGTTATCGTTTCGCTCACTTCGACGGCGGAAGACAACGCGTTTACGTTCCTTGCTGTCATTTCGTCGAGCCTGTTCGACCCTGACCCACGGACTTACGGTGCGCTGACGAAAACGGGAAGCTGTTCTTACGCTTTTCAGGATTTCGCCCGTTCCAACATGGCCGAAACGGTGACCGGTGCGAAATGGCTCGTTTCGAACGGTCGCGATATCCACGGGAACTACGACCCGAATTTCTACGCATTGCCGAACGGTCAATCGCTGAACTCTCATTTCGAGGGTATCGACAACGCGCTTCAGACCCTTCAGGAATATTCGCCATTGGGAAGAAGTGTCGCTGTTGATTTCGGTTTCAGCATCATCGGCGGATGGTCGGCAGACGAAACGGTCGGCGTTCACGCGGTGTCGCATGAGACGGTAATTCCTTCCAATATGGCGGGTTCGATCATGGTCACCGACAGTTCCACGCTTGACGGCGTTTTGAACGTCATGGTCGGAACATCGGTTGTCGGAACTGTGACCATCACGGACGGTGCTGCGGTTTTTGCGTCGTCGGAATTCAATCTTGATCCGGGGCAACTTGTTCGAATCGTTTCGACGAGTGAAGGAACCTTTGAATATGTCGGGTTAACTCTTGTGGGGCATCGTCAAGTCGTTTACGTTGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a8427540fd85fe4aa5b8897ce9f9bf7c5211278d8673761d7afd0f300f9c6ef8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7055
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genome sequence of the flagella-specific Agrobacterium bacteriophage 7-7-1 Schmitt,R., Van den Bossche,A., Lavigne,R. and Kropinski,A.M. 1977-01-01 — GenBank