Protein

View in Explore
Genbank accession
YAB57924.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MAMEWKQVFLYDGTQILLKPDMFGNYEYPKEKWTDIMPPQGIYTPYHFNGEKWIGSTKEEWEARQPKIELPPSEEEELHLELIKTNIELKKEVSQLNEDVTNLVTMLVQKQGGN
Physico‐chemical
properties
protein length:114 AA
molecular weight: 13444,16300 Da
isoelectric point:4,74489
aromaticity:0,10526
hydropathy:-0,75877

Domains

Domains [InterPro]
DC_0222
STR
1–114
DC_0222
Coil
Unmapped
79–99
Coil
YAB57924.1
1 114
Architecture
STR
STR 1-114
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage Slasher
[NCBI] 		3446834 Viruses > unclassified bacterial viruses >
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAB57924.1 [NCBI]
Genbank nucleotide accession
PV956269.1 [NCBI]
CDS location
range 23622 -> 23966
strand +
CDS
ATGGCTATGGAATGGAAACAAGTATTTTTGTATGACGGAACACAAATACTTTTAAAACCTGATATGTTTGGCAATTATGAATATCCGAAAGAAAAATGGACGGATATTATGCCACCACAAGGAATTTATACACCTTATCATTTTAACGGAGAAAAATGGATTGGTAGTACAAAAGAAGAATGGGAAGCAAGACAACCTAAAATAGAATTACCACCAAGCGAAGAGGAAGAACTTCATCTTGAACTTATAAAAACAAACATAGAACTAAAAAAAGAAGTTTCGCAACTCAATGAAGATGTAACAAATCTTGTAACAATGTTAGTTCAAAAGCAAGGAGGCAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
98603bc75da24311c57e247d1f83d631f257613fea5aa74cab2aa63318ca2c5f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9200
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequences of Staphylococcus epidermidis siphophages Cicami, Sazerac, Slasher, Southeast, Spartan, and Undine Nava,N.R., Ybanez,K., Pollitz,L., Hill,C., Aslan,B. and Hatoum-Aslan,A. 2021-04-16 — GenBank