Protein

View in Explore
Genbank accession
AGH57531.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSIEKVENFAEIGDKNLNGLDVSEGFPREEKPERPWFNYLFHTLSNATNQIIDGIESINTELDNTVRSKDFNIIIKDSSPKNLEYFNNSDIKVGSDNASVDSIALQNALTSEYAIDLAGLKLKIDRTINVNRIESCIMSSIPYQRNGSGHALRSANIEVVDDALPILFNTSEYNCRFSGFRIRCNTTNSATQGFYNERSNFVQSDVDILINDVTMDYGLRFVNQRGRGLDLQRCSISGLKDMAIRLDWDSRWIPNGQSNDENGTAQRAYTIADIRQHGCLGLVENIGDYKQEIGNILISNIQGDTGGCLFKGVMNNVLMNNVFSYFHPVVQNQMEIWDGSHDSFINMFNMSGYNVGTVKRVPKKSIEIKCGVLGIDNIVFSNGTIGDSEQWPVSVTGGGKLDVTFDNVNFKNTATTNNELIWLSQTAATPITKWDLYFKNCRFTATKTTSATKVFNGTSTSLITIYRDFMTKKSGYATWANPSFTELSEVTQDPG
Physico‐chemical
properties
protein length:495 AA
molecular weight: 55297,23410 Da
isoelectric point:5,07472
aromaticity:0,09495
hydropathy:-0,36444

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH57531.1
1 495
Domain Start End Length (AA) Confidence
N-terminal 1 100 100 0,9803
Central domain 101 456 357 0,9894
C-terminal 457 495 38 0,8051
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-100
Central
101-456
C-terminal
457-495

Taxonomy

  Name Taxonomy ID Lineage
Phage Psychrobacter phage pOW20-A
[NCBI] 		754048 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Psychrobacter sp. OW20
[NCBI] 		728061 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Moraxellaceae > Psychrobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH57531.1 [NCBI]
Genbank nucleotide accession
JF974295.1 [NCBI]
CDS location
range 39024 -> 40511
strand +
CDS
ATGAGTATAGAAAAAGTAGAGAATTTTGCTGAGATTGGCGATAAGAATCTTAACGGCCTTGATGTTTCAGAGGGTTTTCCAAGGGAAGAAAAACCAGAAAGACCTTGGTTTAATTATCTATTCCATACGCTAAGCAATGCAACCAATCAGATAATTGACGGCATAGAGTCTATAAACACCGAGCTTGATAATACAGTTAGAAGCAAAGATTTCAATATTATCATTAAAGACTCGTCACCAAAAAATCTAGAGTATTTTAATAACTCCGATATAAAAGTTGGTAGCGACAATGCGTCGGTTGACAGTATAGCTTTGCAAAATGCGCTAACAAGTGAGTACGCCATTGATTTAGCTGGATTAAAGCTAAAAATCGATAGAACTATTAATGTTAATAGAATCGAGTCTTGCATTATGTCGTCAATACCCTATCAGCGCAATGGTAGCGGTCACGCACTAAGATCGGCAAACATTGAGGTCGTTGACGACGCACTGCCAATTTTATTCAACACTAGCGAATATAATTGCAGGTTTTCAGGTTTTCGTATTCGCTGCAATACGACCAATAGTGCTACGCAAGGTTTTTACAACGAGCGTTCAAACTTCGTTCAGTCTGACGTAGATATTCTGATAAATGATGTAACTATGGATTATGGTTTGAGATTTGTCAATCAACGAGGTCGTGGTTTAGACCTGCAAAGATGCTCGATTTCAGGCTTAAAGGATATGGCAATTCGCCTTGATTGGGATAGCCGATGGATACCAAATGGTCAGAGTAACGATGAAAACGGTACAGCTCAACGTGCTTACACTATTGCGGATATTCGTCAGCATGGTTGCTTAGGGCTTGTTGAGAATATCGGAGACTACAAGCAAGAGATTGGTAATATTCTCATCTCAAATATCCAAGGCGATACTGGCGGCTGTCTATTTAAAGGCGTTATGAACAACGTACTCATGAATAATGTGTTCAGCTATTTCCACCCTGTTGTCCAAAATCAAATGGAAATATGGGACGGCAGCCACGACAGTTTTATTAATATGTTTAATATGTCAGGTTATAACGTAGGTACAGTCAAACGTGTACCTAAGAAGTCTATCGAGATTAAGTGCGGGGTACTTGGTATTGATAATATTGTATTCAGTAACGGTACGATTGGCGACAGCGAGCAGTGGCCTGTTAGCGTTACAGGTGGCGGCAAGCTAGATGTTACATTTGATAATGTTAATTTTAAAAATACAGCCACTACAAACAACGAGCTTATATGGCTATCGCAAACGGCGGCAACTCCAATTACCAAGTGGGATTTGTATTTCAAAAATTGCCGTTTCACTGCTACAAAAACCACAAGTGCTACCAAAGTGTTCAACGGTACAAGTACAAGCCTTATTACGATTTACCGTGATTTTATGACAAAGAAGTCAGGTTATGCAACGTGGGCGAATCCGAGCTTTACTGAGCTTTCCGAAGTTACACAAGACCCAGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
60b9bcbca8d48d431f90fe21acd75532cd9bd053b4343faf06eeb04eb4fb1d44
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7376
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Psychrobacter phage pOW20-A Henn,M.R., Wolf,A., Jost,G., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank