Protein

View in Explore
Genbank accession
AUR87897.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MSDLDNAINSINASAAKAENTATFLDDMSTFDEQSSVTNPNNGQTVASIPKQVKDRTDELFAAAESDINQAVSDAAQSATDAQDAADSIGRYQGLWPDTGGSADKGDTYQTQISGTPTGQYFTALQNTTVEPVGDDANWREVVSNQSLGTVTNYTANSISDMVMGITLGGVTLDFTAGDVIEVLGRDSADDGYARKFIVKASASGGVQLNNGKYAVLINDAPKERWDSDNSKSNDVDVFVAYGQSNARGSTPIASSTPFVLPTGWGLKWNWQTSTLDDLQDPCAKDGGSDISAWPSFADQWTRLTGRKCIIVNAAVGGSTIFKLNPTAPEGWFDDMTNATDSAIAAAIAEGYRIKSVQMLWAQGEADAKNQTDIATYKSLMDDIESAFTAKYFGQGYTYGGVYISKVGFDWSSQIAADYDWTLQIGFTQTSATKYKKYQTPAFDGAPTFTRTNRLMSNDDIHYSHLGYNLMGEVMAENIWRTRYKGDDVKGKIIGNALSYKDVQFVEPIQSNSGVESPISCIFKIKEYALDEGAPLAEVYGNLIRFLRGELVNAGGFGIKWDFDATTGNRLKIQNGDGTIQMKFLNGGIQIQNSSGVAQHTLYPDGRVQFHNLPDSPSGLATGELYYDPADGNTVKYK
Physico‐chemical
properties
protein length:638 AA
molecular weight: 69000,18100 Da
isoelectric point:4,50144
aromaticity:0,10031
hydropathy:-0,41364

Domains

Domains [InterPro]
Coil
Unmapped
1–21
Coil IPR036514
DC_0090
STR
1–635
DC_0090
SSF52266
STR
236–485
SSF52266
IPR005181
ENZ
236–384
IPR005181
AUR87897.1
1 638
Architecture
STR
STR 1-635 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.105.O._10N.286.49.B4
[NCBI] 		1881247 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR87897.1 [NCBI]
Genbank nucleotide accession
MG592477.1 [NCBI]
CDS location
range 31717 -> 33633
strand +
CDS
ATGAGCGATTTAGACAACGCTATAAATTCAATTAACGCATCCGCAGCTAAGGCAGAAAATACCGCTACCTTTCTGGATGATATGTCGACGTTTGACGAACAATCAAGCGTAACCAACCCAAACAACGGGCAAACTGTTGCGTCTATTCCTAAGCAAGTAAAGGACCGCACGGATGAGTTGTTCGCCGCTGCTGAGTCGGATATCAATCAAGCAGTATCTGACGCAGCACAAAGCGCAACAGATGCACAAGATGCAGCGGATAGTATTGGTCGATATCAAGGCTTATGGCCTGATACAGGTGGAAGTGCTGATAAAGGCGACACATATCAAACTCAAATAAGCGGCACACCTACAGGTCAATACTTTACAGCACTACAAAACACAACAGTCGAACCGGTTGGTGATGATGCAAATTGGCGGGAGGTTGTTAGCAATCAGTCTTTGGGTACTGTCACAAACTACACAGCAAATAGCATCTCGGATATGGTTATGGGTATAACCCTTGGGGGTGTTACTTTAGACTTTACTGCGGGCGATGTTATTGAGGTTCTTGGTAGGGATTCCGCCGATGACGGTTACGCTAGAAAATTTATTGTCAAGGCTTCAGCTAGTGGTGGCGTACAGCTTAATAATGGCAAATATGCGGTGCTTATAAATGATGCGCCGAAAGAGCGGTGGGATTCAGATAACTCAAAATCTAATGATGTTGATGTGTTTGTTGCTTATGGTCAGTCCAACGCAAGGGGCTCCACTCCTATCGCCTCATCAACTCCGTTTGTTTTACCTACAGGGTGGGGTTTAAAATGGAACTGGCAAACTTCCACGCTGGATGATCTACAAGACCCTTGCGCAAAAGATGGCGGGTCTGACATTTCAGCTTGGCCTTCATTTGCTGACCAATGGACAAGATTAACGGGCAGAAAGTGTATTATCGTCAACGCTGCGGTTGGTGGCTCTACAATATTTAAACTAAACCCTACAGCTCCGGAGGGTTGGTTTGATGATATGACAAACGCTACAGACTCTGCCATTGCTGCTGCCATTGCTGAAGGCTACAGAATAAAGTCGGTACAAATGTTATGGGCACAAGGTGAGGCTGATGCTAAAAACCAGACAGATATAGCTACATATAAATCATTAATGGACGATATAGAATCTGCATTTACCGCTAAATATTTCGGTCAAGGTTATACGTATGGCGGTGTTTATATAAGTAAAGTCGGGTTTGATTGGTCCAGTCAAATTGCTGCGGATTATGACTGGACACTACAGATCGGATTCACACAGACATCAGCAACAAAATATAAGAAATACCAAACTCCTGCATTTGATGGGGCTCCTACATTTACGAGAACCAATAGATTGATGTCTAATGATGATATTCACTACTCACATCTAGGCTATAATTTGATGGGAGAAGTGATGGCTGAGAACATCTGGCGAACTCGCTATAAGGGTGATGACGTTAAGGGTAAGATTATCGGAAACGCATTATCCTATAAAGATGTTCAGTTCGTTGAGCCTATACAGTCTAATTCTGGGGTTGAGTCTCCCATTAGTTGTATATTTAAAATAAAAGAATACGCATTGGATGAGGGTGCACCCCTAGCTGAAGTCTATGGTAATCTGATTCGCTTCTTGCGCGGAGAGCTTGTTAATGCCGGTGGGTTTGGGATTAAGTGGGATTTTGATGCTACAACAGGAAACAGGTTAAAGATACAAAATGGTGATGGAACTATCCAAATGAAGTTTCTAAACGGTGGTATTCAGATTCAAAACTCATCGGGGGTAGCGCAGCACACCCTGTATCCTGATGGTAGAGTTCAGTTTCATAACCTCCCAGACTCCCCATCAGGGCTTGCTACTGGTGAGCTTTACTATGATCCCGCAGACGGTAACACTGTTAAGTACAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
78b65d831074859085182bfc6ea048941b6fb74b46377ab3aaf0b0fb93ec6631
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7241
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank