Protein

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Genbank accession
XYY22191.1 [GenBank]
Protein name
outer membrane protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADFLATNEFAGTGAVMQVEVNFAGVRVDLPNQPAPYLEADDVKAAIVTPATNTTVEVVTPITMTQINALTFRTDVLVPVGQTLRVYRSTDIEFPIVDFVSLQVVTESDLDSQARQTLYAVMESSDNAAIAVRNSQTASETATQAFVLAEQAVDTADAATVTADSAQAAAAAAVGTANAANSKADTALANAAAAEAHAESVEVLAQQAGDDADAAAQSAADANTAANTAITTANGIDAKAQSALDASAAATTTANQAAATANGIAATANQANATANSANATAGQALTTANNAQASVNAAITGKQDHTTRLDQVATIATPATAGYYNLIGVNASGNLAPVTVSSVLAPLLSSANAGAFRTGLGIGTADNVQFATLTTTTNVIANGYVAANTMGTVTGTSVNFTGGITTAGTLRSNSDMATKTQLSVSASGTGNAHVWFRDDDGVTERGLIYADTARQLHIRANAGSVGEVVVNSANHWTFPNGAEFPWGGQMSIFYCPTGASAGMYGACNLQLQGTNGGVAALGFHNAGRVALALWLTDANELQLMKNSGANSEMIHSGNLGAWMISALPGEALGQVSSLQNSTGTNIGLNGQAAGSSLRYSSHNNVSSAPPGTWRCLGWSNNGGVSTWQRVG
Physico‐chemical
properties
protein length:632 AA
molecular weight: 63877,48170 Da
isoelectric point:4,49661
aromaticity:0,05222
hydropathy:0,03370

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYY22191.1
1 632
Domain Start End Length (AA) Confidence
N-terminal 1 251 251 0,9731
Central domain 252 450 200 0,1355
C-terminal 451 632 181 0,9792
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-251
Central
252-450
C-terminal
451-632

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ppr_SeaD1
[NCBI] 		3446272 Viruses > unclassified bacterial viruses >
Host Pseudomonas protegens Pf-5
[NCBI] 		220664 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas protegens

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYY22191.1 [NCBI]
Genbank nucleotide accession
PV763891 [NCBI]
CDS location
range 14906 -> 16804
strand +
CDS
ATGGCCGATTTCCTCGCCACGAACGAGTTCGCAGGTACTGGCGCGGTCATGCAGGTGGAGGTGAACTTCGCCGGTGTCCGAGTTGACTTGCCGAACCAGCCCGCTCCGTATCTGGAAGCGGACGATGTAAAGGCAGCCATCGTGACTCCGGCGACCAACACCACTGTCGAAGTGGTTACGCCGATCACCATGACTCAAATCAATGCCCTGACCTTCCGTACCGATGTACTGGTGCCGGTGGGCCAGACCCTGCGCGTGTACCGCAGCACTGACATTGAGTTCCCAATAGTGGACTTCGTGTCGTTGCAGGTGGTGACTGAATCCGACTTGGACAGTCAGGCACGCCAGACGCTTTACGCGGTGATGGAGTCCTCGGACAACGCCGCAATCGCTGTACGGAACTCGCAGACTGCAAGCGAGACCGCGACCCAAGCATTCGTGCTGGCAGAGCAAGCCGTGGATACCGCTGATGCGGCCACCGTCACGGCTGACAGCGCTCAGGCTGCGGCTGCTGCGGCTGTCGGTACTGCAAACGCTGCGAACTCCAAGGCTGACACAGCTCTGGCGAACGCTGCCGCTGCCGAGGCGCACGCGGAGTCTGTAGAAGTGCTGGCCCAACAGGCTGGTGACGACGCTGACGCTGCTGCACAGTCCGCTGCTGACGCTAACACCGCTGCCAACACAGCAATCACGACCGCCAACGGCATCGACGCCAAGGCTCAATCCGCTCTGGACGCATCCGCTGCCGCCACTACCACGGCGAACCAAGCGGCTGCTACTGCGAACGGCATTGCTGCTACTGCGAACCAAGCCAACGCCACTGCGAACTCTGCAAACGCTACGGCAGGTCAGGCGCTGACCACTGCCAACAACGCTCAGGCTTCCGTTAACGCTGCGATCACAGGCAAGCAGGACCACACTACACGTCTGGACCAAGTAGCCACAATCGCAACTCCTGCGACCGCTGGGTACTACAACCTGATTGGTGTGAACGCTTCGGGCAACCTCGCTCCCGTTACTGTGAGTTCGGTTCTCGCCCCGTTGCTTAGTTCTGCTAACGCTGGTGCCTTCCGAACTGGGCTGGGGATTGGCACTGCCGACAACGTACAGTTCGCGACACTGACCACAACGACCAACGTAATCGCCAACGGCTACGTCGCTGCGAACACCATGGGCACTGTGACCGGCACGTCTGTGAACTTCACTGGCGGCATCACAACTGCGGGTACGCTGCGTTCCAACTCGGACATGGCTACCAAAACGCAGTTGTCCGTGAGTGCCTCTGGTACTGGCAACGCGCATGTCTGGTTCCGCGATGACGACGGCGTAACTGAACGAGGTCTGATCTACGCTGACACGGCACGCCAACTGCACATCCGTGCCAACGCAGGAAGTGTTGGCGAGGTGGTGGTCAACAGCGCTAACCACTGGACCTTCCCTAACGGGGCTGAGTTCCCGTGGGGCGGACAAATGAGCATCTTCTACTGCCCAACGGGCGCATCCGCTGGCATGTACGGTGCCTGCAACTTGCAGCTTCAAGGCACCAATGGAGGTGTGGCGGCTCTGGGCTTCCACAACGCAGGCCGGGTTGCACTTGCACTGTGGCTGACCGACGCCAACGAATTGCAACTGATGAAGAACAGCGGCGCGAACTCCGAAATGATTCACTCCGGGAACCTCGGTGCATGGATGATTTCGGCGTTGCCCGGCGAAGCTCTTGGTCAGGTGTCCTCGTTGCAGAACTCTACCGGTACGAACATCGGCCTCAACGGTCAAGCTGCCGGTTCCAGTCTCCGCTACAGCTCGCACAACAACGTCAGCAGCGCCCCACCGGGCACATGGCGCTGCTTGGGCTGGTCCAACAACGGTGGCGTGTCCACTTGGCAACGGGTAGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
febd2f5bb2c0cc8b69e27f852d0370dacab9f3b7b5f7907a694c01f09007aded
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8018
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudomonads coordinate innate defense against viruses and bacteria with a single regulatory system Brinkley,D.M., Bertolli,S.K., Gallagher,L.A., Tan,Y., Motha de Silva,M., Brockman,A., Zhang,D., Peterson,S.B. and Mougous,J.D. — — GenBank