Protein

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Genbank accession
AGH07777.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MRTIKNLALPQDSDYVNFPDGRVRNETVTAAGTPVVEEVYGDLLQNFYKIIRSSGLEITETADSEGTQFQLLDALKIFANEVNDLKQTLTVNQGEISTLLNLDTLPDDYVFIGKITEDISANNIYLLNGTGEVLVNAVSTSDVKASSLVLVVLSQVGYSSITDLTVAAEDLKSLSVSLGTPLSFNSTKNLMYFSDGKIITDYPKVYDVQQAINDSLMTSDFVAIDCFTVKEKLLCYAFNKTNSTYHLFSFLASNPGALEGEVTFIKSVNAAENKPLIYTNGQFLFITNTENEFGDIASHNKIGKYLFDEVALEITLDTSLTIESSFFKSTNCFINEAGSDIYSMLLGQLNKYSLENNTVEDLGNFQSNNGQVFRFNKQTYFYNGSNAAKWNY
Physico‐chemical
properties
protein length:392 AA
molecular weight: 43411,06480 Da
isoelectric point:4,39805
aromaticity:0,10969
hydropathy:-0,09719

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH07777.1
1 392
Domain Start End Length (AA) Confidence
N-terminal 1 176 176 0,9773
Central domain 177 375 200 0,0775
C-terminal 376 392 16 0,9799
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-176
Central
177-375
C-terminal
376-392

Taxonomy

  Name Taxonomy ID Lineage
Phage Cellulophaga phage phiSM
[NCBI] 		756280 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cellulophaga baltica
[NCBI] 		76594 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota
Host Cellulophaga sp. MM#3
[NCBI] 		192170 Bacteria > Bacteroidetes > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Cellulophaga

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH07777.1 [NCBI]
Genbank nucleotide accession
HQ317392 [NCBI]
CDS location
range 25226 -> 26404
strand +
CDS
ATGAGAACGATAAAAAATTTAGCATTACCTCAAGATTCTGATTATGTTAATTTTCCTGATGGAAGAGTTAGAAACGAAACTGTCACCGCAGCGGGAACTCCTGTAGTTGAAGAGGTTTACGGTGATCTACTTCAAAACTTCTACAAGATTATAAGAAGCTCAGGTCTTGAAATTACTGAAACAGCTGACAGCGAAGGAACTCAGTTTCAATTACTTGACGCTTTAAAGATTTTTGCTAACGAAGTTAATGACCTGAAGCAAACTCTTACAGTTAATCAAGGTGAAATTTCTACGCTATTAAATCTAGATACTCTTCCTGATGATTACGTGTTCATAGGTAAAATAACTGAAGATATTTCAGCTAACAACATCTACTTGTTGAACGGTACTGGTGAGGTTTTGGTAAATGCTGTATCTACTAGCGATGTAAAAGCTTCTAGTCTTGTATTAGTTGTATTAAGTCAAGTAGGGTATTCAAGTATAACTGATTTAACCGTAGCAGCTGAAGATTTGAAGAGTTTGAGTGTGTCATTAGGAACGCCTTTATCATTCAACAGCACTAAGAATTTGATGTATTTTTCCGACGGTAAAATTATAACTGATTACCCTAAGGTGTATGACGTACAACAAGCAATCAACGACAGCTTAATGACGAGCGATTTTGTCGCTATTGATTGTTTCACTGTAAAAGAAAAATTATTGTGCTATGCATTTAATAAAACCAACTCAACTTATCATTTATTCTCTTTCTTAGCTAGCAACCCTGGAGCTCTTGAAGGAGAAGTCACTTTTATTAAAAGCGTTAACGCTGCTGAAAATAAACCACTAATCTATACGAATGGTCAATTCTTATTCATAACTAATACTGAAAATGAATTTGGTGACATTGCTAGTCACAATAAAATTGGTAAATATTTGTTTGACGAAGTTGCTTTAGAGATTACTCTTGACACTAGTTTGACAATAGAAAGCTCTTTTTTCAAGAGTACGAATTGCTTCATAAACGAAGCTGGTTCTGATATTTATTCTATGTTATTAGGACAGTTGAATAAATACAGCTTAGAAAATAATACCGTAGAAGATTTAGGTAACTTTCAATCAAATAACGGACAGGTATTTAGATTCAATAAACAAACTTATTTCTATAACGGCAGCAATGCAGCTAAATGGAATTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
47c096e22ad05a63a63b897f1ae5eabb4cc8dd6ccfa1ea3b02884c6817f558d6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5745
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cellulophaga phage phiSM Henn,M.R., Reimann,L., Holmfelt,K., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank