Protein

View in Explore
Genbank accession
XYM57948.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,54
Protein sequence
MPLSKLQNFIKNTEGKILYVNPNDIGATDSIENQGNSLSQPFKTLQRALLESARFSYVRGNDNDLFDRTTILLFPGEHLVDNRPGFKIKDDGGTAKAISPAGVESIASSTLTLSLDSVFDLDVEDNMLYKFNSTRGGCILPRGTAIVGLDLRKTKIRPLYVPNPTDDAAYKTDLIRLTGTCYFRDFTFFDGSLDSVVYTDPEDFGIANRSRPTFSHHKLTCFGFADGVNKIDDTGLTDLDMYYSKLSNAFNEASGRNIDQKFPLEPQGFSKSRIEWEIVGAFAADPIDIQSIFSGDGINPTNVVTVTTEDPHGLTVGTPIKIKGVQPSDYNISTFVQTVVNPTRFTYLLQEVDPLLAASGVASGADVTIETDTVTGASPYVFNVSLRSVFGMNGMLADGKTASGFRSMVVAQFTAVSLQKDDRAFVKYNPVSRTYDGITISKVTGAQLAAESSSTNTNTVYHLDSRAIYRKGWDTHHIAMINDSIIQVVSVFAIGFNKHFDCRSGGDASITNSNSNFGQIALVSSGFKQEAFTKDDQGFITSIIAPQDFVRQERNIDLVTIDVGLTTQVGVSSHLYLFGFNDKDNPPAIITQGFRVGARTNDNLYVKLSNVEYAAPILISDNVVSTSSTIATGAGSKERITKILGLSATGEFSTNGPHNLVNGEKVRILSEEADLPENLEEDVVYYAIPTGVSLFRVAATLSDATKEEAIAVYGGRGLRVESRVSDKAANDIGSPVLFDPNNNNWFVHVEQDNALYAKLAADGVSGIGVQTPESYIKRVSDTRALGDKIYKYRYFVPKEADAGRDPVEGFILQDSNDTSVRNDQDFTLSAINLSDHDFDKNPRYISTCSVSGSTVTVRVDLPHNLDIGDLVKIVDVKSTTNTTGIALSGYNGIFEVTSIISDKEFTYGTTDQDSVPRTPGDFTSDMNTREALSARYQKVDNKVNASLYRSEVIQKHIPGISDGIYHFNVLTANNAITEEFTDLEYLPDIERFFPQLDRDNVNTNPTAAKSFAKRSPIGAVAVDDPENSITRESIDTYNRVLGIGRTVVQVTRNDEVGITTVVFDREHNLSGIVTCTISAGGNSFDAGDYYNVKLFNDATTTWDGATARVTVGAGGAVDNVDIISGGSGYSDGETLDLDGFTGAEVQIAAAGISTFVQSSAQLTGVGKTDEGVFRVVDVPDTRSIAIAQTVGDPSPVTNQYFINCGMSVGINTIVSFGGISTVTTNNPHGLISGSSFRILDNNDNNKGDYTVLERIGIHTFTISTTNDLQTAPNYILPSVIAARGGEISAETESLGGRSANFYGGELGTLGADIGSLQGDTLIKINLVNSGIATTKRFPIGSFIEIDGEIMRIASDQFSGAANDELTVIRGYLGSDPAAHLEGSLIRKIDVFATELRRPSILRGSGHTFEYLGYGPGNYSTGLPQVQDITLTEREEFLTQSQKRGGGVVVYTAMNNDGDFFIGNKIINPSTGEESTFDAPIPSIRGEDPSVLSVIFDEVTVKQRLVVEGGASKTLLSQFNGPVSIDNVLNISGNTKIDANLEVAGRLKSSGSAEFDGSLNVAGVGTFGGAIDANGGAELGEIEIGIGASAGRIQTTVSDLTLKSATSKVMIEDDVNVDGNIVCDRITADNIIPVGGIIPWAGTSTNIPTGWFLCNGQQISRTTYATLYNILTNGGLQFPYGANVGGNFRLPNMTDRFVVTAGSAYGRGGTGGTANAVVISHNHTVNASNVGDHSHNTGGAGGHAHNISNVGNHGHNTANAGYHGHNTGNAGYHGHNTSGNGGHGHNTNNTGGHAHNTSGNGNHRHWTSGNGGHTHQYNRSENTVEYGRRSNRSRRNDFSWRNTSWVGNHGHNMNYSGNHGHNTNNTGNHGHNISNVGNHGHNVAQNGSHSHGVNQAGNHSHSVNAGGSHGHNTNTVSNHGHNLSNAGGHGHNISATAVGQSGTNRNLPPYFGMFYIIKAA
Physico‐chemical
properties
protein length:1959 AA
molecular weight: 209543,55820 Da
isoelectric point:5,34624
aromaticity:0,07810
hydropathy:-0,30117

Domains

Domains [InterPro]
DC_0066
STR
1–1826
DC_0066
IPR023366
STR
296–363
IPR023366 SSF88874
IPR037053
ATT
1630–1698
IPR037053
IPR011083
ATT
1634–1697
IPR011083
XYM57948.1
1 1959
Architecture
STR
ATT
STR
STR 1-1629 | ATT 1630-1698 | STR 1699-1826 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYM57948.1
1 1959
Domain Start End Length (AA) Confidence
N-terminal 1 137 137 0,8280
Central domain 138 348 212 0,6127
C-terminal 349 1959 1610 0,2903
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-137
Central
138-348
C-terminal
349-1959

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Sf-CH5
[NCBI] 		3413215 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM57948.1 [NCBI]
Genbank nucleotide accession
PV340852.1 [NCBI]
CDS location
range 15829 -> 21708
strand +
CDS
ATGCCTCTTAGTAAGCTTCAAAACTTTATTAAGAACACCGAAGGTAAGATTCTTTATGTGAATCCAAACGACATCGGTGCTACTGATAGTATTGAGAACCAAGGTAACTCTCTATCTCAACCGTTTAAGACTCTACAAAGAGCATTACTAGAGTCTGCACGTTTTTCCTATGTCAGAGGTAATGATAATGACCTATTTGATAGGACAACTATCCTCTTGTTCCCAGGTGAACACTTAGTTGATAATAGACCTGGATTCAAGATTAAAGATGATGGTGGTACTGCAAAAGCAATCTCACCAGCTGGTGTTGAAAGTATTGCCTCATCAACCCTAACTCTATCACTAGATTCTGTCTTCGACTTGGATGTTGAAGACAACATGCTATATAAGTTCAATAGTACAAGAGGTGGATGTATTCTACCTAGAGGTACTGCAATCGTTGGTCTTGACCTAAGAAAGACCAAGATTCGTCCTCTGTATGTACCGAACCCAACTGATGATGCTGCATATAAAACTGACCTAATCCGTCTAACTGGTACTTGCTATTTCAGAGACTTTACCTTCTTCGATGGATCACTTGATAGTGTTGTTTATACTGATCCAGAAGATTTTGGTATTGCAAATAGATCAAGACCAACATTCTCTCACCACAAACTAACTTGTTTCGGTTTCGCTGATGGTGTCAATAAGATTGATGACACCGGTCTAACCGACCTTGACATGTATTATAGCAAACTATCTAATGCTTTTAACGAAGCATCGGGTAGAAATATTGACCAGAAGTTCCCACTAGAACCACAAGGTTTCTCTAAGAGTAGAATTGAGTGGGAAATTGTTGGTGCGTTCGCTGCTGACCCCATTGACATTCAGTCAATCTTCTCTGGTGATGGTATTAACCCTACCAACGTTGTTACTGTAACAACTGAGGATCCTCATGGTTTAACTGTTGGTACACCAATTAAGATCAAGGGTGTTCAACCTTCTGACTATAACATTTCAACGTTCGTTCAGACTGTTGTTAATCCAACCCGATTTACTTACCTCCTACAGGAAGTAGATCCCCTCCTGGCTGCCTCTGGAGTCGCCTCTGGTGCCGACGTAACGATTGAGACTGATACTGTTACTGGTGCATCTCCATACGTCTTTAACGTGTCTCTGAGATCCGTTTTTGGCATGAATGGTATGCTTGCAGATGGTAAAACTGCATCTGGTTTCCGTTCAATGGTTGTGGCACAGTTTACGGCTGTATCACTACAGAAAGATGATCGTGCATTTGTTAAGTATAACCCCGTATCTAGAACCTATGATGGTATTACCATCAGTAAGGTTACTGGTGCTCAACTAGCAGCAGAATCTAGTTCTACTAATACTAATACTGTTTATCACCTAGACAGTAGAGCAATTTATAGAAAGGGATGGGATACACATCACATTGCAATGATCAACGACTCGATTATTCAGGTCGTGTCGGTGTTCGCTATCGGATTCAATAAGCACTTTGATTGTCGATCAGGTGGTGACGCATCTATTACCAACTCTAACTCAAACTTCGGTCAGATTGCGCTTGTTTCCAGTGGATTCAAGCAAGAAGCATTTACAAAAGATGACCAAGGTTTCATTACATCTATTATTGCACCACAAGATTTTGTTAGACAGGAAAGAAACATTGATCTAGTCACTATTGATGTAGGTCTAACAACCCAAGTCGGTGTATCCAGTCATCTATATCTCTTTGGATTCAATGATAAGGACAACCCACCAGCTATTATCACTCAGGGATTCCGCGTTGGCGCAAGAACGAATGATAATCTCTATGTAAAACTCAGCAATGTTGAGTATGCTGCGCCAATTCTGATTTCTGACAATGTTGTTTCTACATCATCAACTATTGCGACTGGTGCAGGATCAAAAGAAAGAATCACTAAGATTTTAGGACTAAGTGCAACTGGTGAGTTCTCAACTAATGGTCCACATAACTTAGTTAATGGTGAGAAAGTTCGTATTCTTAGTGAAGAGGCAGACCTCCCAGAAAACCTAGAGGAAGATGTTGTTTACTATGCGATTCCTACTGGTGTATCACTATTCAGAGTTGCTGCAACTCTATCTGATGCAACAAAAGAGGAGGCGATTGCAGTCTATGGTGGTAGAGGTCTAAGAGTAGAAAGTAGAGTTTCTGATAAAGCAGCAAATGACATTGGAAGTCCTGTACTATTTGACCCCAATAATAACAACTGGTTTGTTCACGTCGAGCAAGATAATGCTCTGTATGCAAAACTAGCAGCAGACGGTGTATCTGGTATTGGTGTTCAAACTCCAGAATCTTACATTAAGAGAGTCTCTGATACCAGAGCTCTTGGCGATAAGATTTACAAGTACAGATACTTTGTTCCTAAAGAGGCAGATGCTGGTAGAGATCCTGTAGAAGGTTTCATCCTACAAGATAGTAATGATACTTCAGTAAGAAATGATCAGGACTTCACTCTATCTGCTATTAACCTAAGTGACCATGACTTTGACAAGAATCCTCGTTATATTTCAACTTGTTCTGTAAGCGGTTCCACTGTCACAGTAAGAGTAGATCTGCCACATAATTTAGATATTGGTGATCTAGTCAAGATTGTTGATGTTAAGAGTACAACTAATACCACTGGTATTGCACTAAGTGGATATAATGGCATTTTTGAAGTAACATCAATCATTAGTGATAAAGAGTTCACTTATGGAACTACTGACCAAGATTCTGTTCCTAGAACTCCTGGTGACTTTACTTCTGATATGAATACCAGAGAAGCACTCTCTGCAAGATACCAGAAGGTTGATAATAAAGTCAACGCATCACTTTATAGATCTGAAGTTATTCAGAAGCATATTCCTGGCATTAGTGATGGTATCTACCACTTCAATGTTCTAACTGCTAATAATGCAATTACTGAAGAATTTACTGATCTAGAGTATCTACCCGATATTGAAAGATTCTTCCCTCAGTTGGATAGAGATAATGTCAATACCAACCCAACAGCTGCTAAATCTTTTGCAAAGAGAAGTCCAATCGGTGCTGTTGCTGTTGATGACCCTGAGAATAGTATCACTAGAGAAAGTATTGACACTTACAACAGAGTCCTTGGCATAGGTAGAACTGTTGTTCAGGTCACCAGAAATGATGAAGTTGGTATTACTACTGTTGTATTTGACAGAGAGCATAATCTAAGTGGTATTGTCACCTGTACGATTTCTGCTGGTGGTAATAGTTTTGATGCGGGTGATTACTATAACGTAAAACTATTCAATGATGCAACTACTACCTGGGATGGTGCAACTGCAAGAGTAACTGTTGGTGCTGGTGGTGCCGTTGATAATGTTGACATTATTTCTGGTGGTTCTGGATATTCAGATGGTGAAACTCTAGACCTAGATGGATTTACTGGTGCTGAAGTACAGATTGCTGCGGCAGGTATTTCAACATTCGTACAATCTTCCGCACAACTAACCGGTGTTGGTAAAACTGATGAAGGTGTCTTCAGAGTTGTAGATGTTCCAGACACTAGAAGTATTGCTATTGCACAAACTGTTGGTGATCCAAGTCCCGTAACCAATCAGTATTTCATCAACTGTGGAATGAGCGTTGGTATTAACACCATCGTTTCTTTCGGCGGTATCTCAACTGTCACCACAAATAATCCACATGGTCTAATTTCTGGTTCTAGTTTCCGTATTCTAGACAATAACGACAACAATAAAGGAGACTACACAGTTCTGGAAAGAATTGGTATTCATACCTTCACAATTTCAACTACCAACGATCTTCAAACCGCACCCAATTACATTCTACCTTCAGTAATTGCAGCTAGAGGTGGTGAGATTAGTGCTGAAACTGAGAGTCTTGGCGGTAGAAGTGCTAACTTCTATGGTGGTGAACTTGGTACTCTAGGTGCAGACATTGGTTCGCTACAAGGTGATACTCTAATTAAGATCAATCTGGTCAACTCTGGTATCGCAACCACGAAGAGATTCCCAATCGGATCATTCATCGAGATTGATGGTGAGATCATGAGAATTGCTAGTGATCAATTCTCAGGTGCTGCAAATGATGAACTTACTGTTATCAGAGGTTACCTAGGTTCTGATCCTGCTGCACATTTAGAGGGATCTCTAATTCGTAAGATCGACGTATTCGCAACTGAACTTCGTAGACCTTCAATTCTAAGAGGTTCTGGTCATACGTTTGAATATCTAGGTTATGGTCCTGGTAACTACTCTACGGGTCTACCTCAGGTTCAGGACATCACTCTAACTGAGAGGGAAGAGTTCCTAACACAATCTCAGAAGAGAGGTGGTGGTGTGGTTGTATACACCGCTATGAATAATGACGGTGACTTCTTCATTGGTAATAAGATTATCAATCCATCAACTGGTGAAGAATCAACCTTCGATGCTCCAATCCCATCAATTAGAGGTGAAGATCCTTCAGTTCTATCTGTTATCTTCGACGAAGTTACTGTTAAGCAGAGACTAGTTGTTGAAGGTGGTGCATCTAAGACTCTACTATCTCAGTTCAATGGTCCCGTAAGTATTGATAATGTTCTCAATATCTCCGGTAATACTAAGATTGATGCAAATCTAGAAGTTGCTGGAAGACTTAAGTCTTCTGGTAGTGCTGAGTTTGATGGATCACTAAATGTTGCTGGTGTTGGTACTTTCGGTGGTGCAATCGACGCTAACGGTGGTGCTGAACTCGGTGAGATTGAGATTGGTATTGGTGCATCTGCTGGACGTATTCAAACTACTGTCAGTGATCTAACTCTAAAGAGTGCCACGTCCAAGGTCATGATCGAGGACGATGTGAACGTTGATGGTAACATCGTTTGTGACAGAATTACTGCTGATAACATCATCCCTGTTGGTGGAATCATCCCCTGGGCTGGTACATCAACCAACATTCCTACTGGTTGGTTCCTCTGTAATGGTCAGCAAATTTCCAGAACCACATATGCAACTCTATATAATATCTTGACAAATGGTGGACTACAGTTCCCATATGGTGCAAACGTTGGTGGCAACTTCAGACTACCAAATATGACCGATAGGTTCGTAGTTACTGCTGGTAGTGCTTACGGTAGAGGTGGAACTGGTGGTACTGCAAATGCTGTAGTTATTTCACACAACCACACTGTAAACGCATCAAACGTTGGTGATCATAGTCACAATACTGGTGGTGCTGGTGGTCACGCACACAACATTAGTAATGTTGGTAACCACGGTCATAATACAGCAAATGCTGGTTACCATGGTCACAATACTGGCAATGCTGGTTACCATGGTCACAATACTTCTGGTAATGGTGGTCACGGACATAACACTAACAATACTGGTGGTCACGCACATAATACATCTGGTAATGGTAACCACCGTCACTGGACATCTGGCAATGGTGGACATACTCACCAGTACAACAGATCTGAGAACACTGTTGAATATGGAAGACGTTCAAATAGATCCAGAAGAAATGATTTCTCCTGGAGAAACACTAGCTGGGTTGGTAACCACGGTCATAACATGAACTATAGTGGCAACCATGGACATAATACCAATAACACTGGTAACCATGGTCACAATATCAGTAATGTTGGCAACCACGGTCACAACGTTGCACAGAATGGTTCACACTCTCACGGTGTAAACCAAGCAGGTAATCACTCACACAGTGTAAATGCTGGCGGAAGTCATGGTCACAACACAAATACTGTTTCTAACCATGGACATAACCTGAGTAATGCTGGTGGTCACGGTCACAACATTAGTGCAACAGCTGTTGGACAGTCTGGAACTAACAGAAATCTACCTCCATACTTCGGAATGTTCTACATCATTAAAGCAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
40d120c3351e4d1efa3a4308801aab112200995037bb7fc1a07d0daa78db5a0d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7929
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50