Protein

View in Explore
Genbank accession
AUR96499.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAYSPSEKYPGAVDVDPDYQGGKFRDNNPSTTNNGSPLKAIDRNELLARDEAIMNDAGFEYSGVADTPQDSQLFKAYKASLGNGANLLSNHNFLIQTPDDSQPLPSATPTSYPPGHQIFSGVFANETTGITNLTYIDGRVSFSGGDLYFSVPNTGAVSRLTSDQLTASVADFDGKPRTRGVSFALVGDEYRVTVGVDALEDVSANPTPIGSMKFEQGGVATGHEVQFGLVATGSTTPRHLEDRFADVVSVKDFGAVGNANFVNFTTGEWFVDSLLTIPSTEDTAAFKAAITRARDKSLCIYAPGSGYLISDSLFFGPLSEADANLYPTQARNICSGLIGDGPSSTILAVNGMSSGQVLDMSGLREKYLKGFRVDSLNPNSYPDIGILTARLWRSGISAPTNNDFGTIDNVTVNGYWRFTPYFAHATEEIVVNQSRFYTKSDDSLGCWVSSDNISNEGFTPTASSETSMSFATGSQSNLHQTHKNCDYSLDTESPTRSNLAMCWIKGSLMVHIEMPFFNNNSVNHDCVRADTNDAGQPSFYGVHVFGANAHQSTKSGMRLVGPNTNCSWSEGSRTMSFEDGQVIVEAFTNSFQSEYLDGDLVLNNSISGCNFGSIRNLNWDTQYSIQISELTVRGNIVTSTTGTPSSANNFEITRGNTTSIIRGEWAAPSNSALDVQIGVTGARGVEVGANYAFFNSTFLRMNARQGSSSGYNFWDCVDSGVTYAEMRKGGYLVFPDEGTVAMKDTVTGVLKKITIANGVLTVSNL
Physico‐chemical
properties
protein length:765 AA
molecular weight: 82269,79900 Da
isoelectric point:4,74312
aromaticity:0,09804
hydropathy:-0,27908

Domains

Domains [InterPro]
DC_0790
STR
63–307
DC_0790
IPR012334
STR
225–570
IPR012334
IPR011050
STR
245–657
IPR011050
DC_1426
STR
303–765
DC_1426
AUR96499.1
1 765
Architecture
STR
STR 63-765
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR96499.1
1 765
Domain Start End Length (AA) Confidence
N-terminal 1 272 272 0,7071
Central domain 273 700 429 0,9832
C-terminal 701 765 64 0,9217
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-272
Central
273-700
C-terminal
701-765

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.225.O._10N.261.48.B7
[NCBI] 		1881440 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio splendidus
[NCBI] 		29497 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR96499.1 [NCBI]
Genbank nucleotide accession
MG592592.1 [NCBI]
CDS location
range 31937 -> 34234
strand +
CDS
ATGGCTTACTCACCTAGCGAAAAATATCCGGGCGCAGTCGATGTCGATCCGGATTATCAAGGCGGTAAATTCCGCGATAACAATCCATCAACAACGAATAACGGCTCTCCGTTAAAAGCCATTGACCGTAACGAGTTGCTAGCTCGTGATGAAGCGATCATGAATGACGCCGGCTTTGAGTACAGCGGCGTTGCTGACACGCCTCAAGATTCCCAACTATTCAAGGCTTACAAAGCCTCGCTTGGCAATGGCGCAAACCTGCTATCAAACCACAACTTCCTAATTCAGACGCCTGACGACTCACAGCCGCTGCCTAGTGCCACTCCAACAAGTTATCCGCCTGGGCATCAAATCTTTTCTGGTGTTTTTGCCAATGAAACAACCGGCATTACAAACCTAACTTACATTGATGGACGAGTATCTTTTAGTGGTGGTGATTTGTATTTTTCCGTGCCAAACACTGGTGCAGTCTCTCGCTTAACTTCAGACCAACTAACCGCTTCAGTTGCTGACTTTGACGGCAAGCCTCGCACTCGCGGTGTGTCATTTGCGCTAGTTGGTGATGAATATCGCGTTACTGTTGGTGTTGATGCGCTTGAAGATGTTTCAGCAAACCCAACTCCGATTGGTTCTATGAAGTTTGAGCAGGGGGGTGTGGCGACAGGGCATGAGGTTCAATTCGGGTTGGTTGCAACGGGAAGTACGACACCTAGGCATTTAGAGGATAGGTTTGCGGACGTAGTGAGTGTTAAGGACTTCGGCGCTGTAGGTAATGCTAATTTTGTGAATTTCACAACTGGTGAGTGGTTCGTTGATTCACTACTAACAATCCCATCAACAGAGGATACTGCTGCATTTAAAGCCGCAATAACAAGGGCTAGAGATAAATCCCTTTGTATCTACGCGCCGGGTAGTGGATATTTGATTTCTGATAGTTTATTTTTTGGCCCCCTATCAGAGGCGGATGCGAACTTGTACCCAACGCAAGCAAGAAACATTTGCTCAGGTCTGATTGGTGACGGCCCAAGCTCAACTATTTTAGCGGTAAACGGGATGAGTTCGGGGCAAGTTCTTGACATGTCAGGGCTCAGAGAAAAGTATCTCAAGGGCTTTAGGGTTGACAGTCTAAATCCGAATAGCTACCCGGATATTGGAATACTTACGGCTCGGTTGTGGAGATCGGGAATAAGCGCCCCAACCAATAACGATTTTGGTACAATTGACAACGTAACAGTAAATGGGTACTGGAGGTTTACACCGTACTTTGCCCACGCAACCGAGGAAATAGTGGTTAATCAGAGTAGATTTTACACTAAATCTGACGACTCGCTTGGTTGTTGGGTGTCGTCAGATAATATATCCAACGAGGGTTTTACGCCTACAGCGTCATCAGAAACATCCATGAGTTTCGCAACGGGATCTCAAAGCAACTTACATCAAACCCATAAAAACTGTGATTACTCTCTAGACACTGAATCACCGACAAGAAGTAACTTAGCTATGTGTTGGATTAAAGGTTCGCTAATGGTTCATATTGAGATGCCTTTCTTTAACAACAATTCTGTAAATCACGACTGCGTAAGAGCTGACACCAATGATGCTGGTCAGCCTAGTTTTTATGGGGTGCATGTTTTCGGGGCTAACGCTCATCAGTCAACAAAGTCGGGAATGCGCTTGGTTGGGCCAAACACTAACTGCTCATGGTCTGAAGGCTCAAGAACGATGTCGTTTGAAGACGGTCAAGTTATAGTTGAGGCATTTACCAACTCTTTCCAAAGTGAATATTTAGACGGTGATTTGGTTTTAAATAATTCAATAAGTGGTTGTAACTTCGGATCTATAAGAAACCTTAATTGGGACACTCAATACTCAATTCAAATATCTGAACTAACCGTTAGGGGTAATATAGTAACGTCAACCACAGGCACCCCAAGTAGCGCAAATAATTTTGAGATCACAAGAGGTAATACTACAAGCATTATCAGGGGTGAATGGGCTGCGCCGTCAAATTCAGCTCTTGATGTGCAAATCGGTGTTACAGGGGCTAGAGGTGTTGAAGTAGGGGCGAATTACGCGTTCTTTAATAGCACCTTTCTTCGAATGAACGCAAGGCAAGGTTCGTCTTCAGGGTATAATTTTTGGGACTGCGTCGATAGCGGAGTTACTTATGCTGAAATGAGAAAAGGCGGGTACTTAGTATTTCCAGATGAGGGAACGGTTGCAATGAAGGACACAGTGACCGGAGTATTAAAGAAAATTACAATTGCCAACGGTGTTTTGACGGTTTCAAACTTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e498a293714bf139edbc8dd70247571a3e50ed3bc5017dde72507155dab85c5d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6100
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank