Protein

View in Explore
Genbank accession
WHL30582.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSDEVIVSRNVPIPAGRQLANNSLSVTLASDQPPIPIISAADIPSETKTSMFGFPVVESRQFLLQELATYGIDETIWRGIGDVTYDSLRSCVQLLPSNLTSLLSTHQSAFSYKYQPGKEICVSQAIQASIGPIAANLVQQWGEFTKRDGYGWRVLTQEGTSVNAGSQSIIPWHNYLCFFRRTSALPTGYTSTTVTSDPTGISTSANAPIILGSGNPNTLHRPSYLVGSGTVTDYLEAGAWEDITFTTLKIVANDNQVFNKDKLTGKPGDGPIPIDAGSRGKSAKEISYVSLSFEITNVTGLTGSSITLPTLGSDNAFGTNTVKPLAGGWIRAGMSIRVASGGTTTYNGFVTSVSGNSISISPAISGTLSGSLFVNESTNLCMFLIQRSWYGGAGGKGLVYIPDSNTPFNGTTRWTSAHEVRIGDTLPVPSMSNPDMPITYQIGRYAGSNASINNNAFLRRFGVSVWINGGDPRPVKIESYGSGSPRTANTNNYVPVLAIAVKPFVYNKEVTNNERPQKSRVYPYKLYASSGGQVSEIYLCKLSSDNYTALNIGNLTWATAKTDSEQLKVVATNSTFNATTIAFNAGYPTGIGGKQIGPFYCGTNEGTEIDLTDIFDPQRELLGRAEATATGVTGDILLVIARSLGGTSSNVAASLVYGVQ
Physico‐chemical
properties
protein length:660 AA
molecular weight: 70256,94430 Da
isoelectric point:6,48109
aromaticity:0,08788
hydropathy:-0,12106

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WHL30582.1
1 660
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,8393
Central domain 141 439 300 0,8942
C-terminal 440 660 220 0,9880
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-439
C-terminal
440-660

Taxonomy

  Name Taxonomy ID Lineage
Phage Cylindrospermopsis phage Cr-LKS4
[NCBI] 		3046275 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cylindrospermopsis raciborskii KLL07
[NCBI] 		683357 Cyanobacteriota > Cyanophyceae > Nostocales > Aphanizomenonaceae > Cylindrospermopsis > Cylindrospermopsis raciborskii

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WHL30582.1 [NCBI]
Genbank nucleotide accession
OQ625504 [NCBI]
CDS location
range 16795 -> 18777
strand -
CDS
ATGTCTGATGAAGTTATAGTTTCAAGAAACGTTCCAATCCCTGCTGGTAGGCAATTAGCAAATAATTCACTTTCGGTTACACTAGCTTCAGACCAACCACCGATACCAATTATTAGCGCAGCGGATATACCTTCGGAAACAAAAACCAGCATGTTCGGTTTTCCGGTGGTAGAATCACGTCAGTTTTTACTACAAGAGTTGGCTACTTACGGTATTGACGAAACCATTTGGCGAGGGATAGGCGACGTTACTTATGATTCACTGAGAAGTTGTGTTCAGTTGTTACCAAGTAATTTAACTAGTTTATTATCGACACACCAATCAGCATTTTCTTATAAATATCAACCTGGTAAAGAAATTTGCGTATCTCAAGCCATACAAGCTTCTATAGGCCCAATTGCGGCAAATTTAGTTCAGCAATGGGGAGAGTTTACCAAAAGAGATGGTTATGGTTGGCGGGTTCTTACTCAGGAGGGAACTTCAGTTAATGCAGGATCCCAGAGTATTATTCCTTGGCATAATTATTTGTGCTTTTTTAGGCGCACGTCTGCTTTGCCTACTGGATACACAAGCACCACTGTAACATCAGACCCAACTGGAATTAGCACTAGTGCAAATGCGCCAATTATACTAGGTAGTGGGAACCCAAATACGCTTCACCGTCCATCTTACTTAGTTGGTAGCGGAACTGTAACTGATTACTTAGAAGCTGGAGCCTGGGAAGATATTACTTTTACCACCCTAAAGATTGTTGCTAATGATAACCAGGTTTTTAACAAAGATAAGCTGACTGGTAAACCTGGTGATGGGCCCATACCAATTGATGCTGGATCTCGTGGGAAGTCAGCTAAAGAAATTTCCTACGTATCTTTAAGTTTTGAAATTACAAACGTTACTGGATTAACTGGTTCTTCAATTACTTTACCTACTCTTGGTAGTGACAATGCTTTTGGCACTAACACAGTAAAGCCGTTAGCTGGTGGTTGGATTCGTGCCGGTATGTCAATTCGCGTAGCTAGTGGTGGTACTACTACTTATAATGGGTTTGTAACCAGTGTTAGCGGAAATAGCATATCAATTTCTCCCGCTATATCCGGAACTTTGTCGGGTTCTTTATTTGTTAATGAATCCACAAACTTATGTATGTTTTTAATTCAAAGAAGTTGGTATGGTGGTGCGGGTGGTAAAGGGCTGGTATATATTCCAGACTCTAATACTCCTTTTAATGGGACTACTAGATGGACATCTGCCCACGAGGTTAGAATAGGCGACACGTTGCCAGTGCCATCTATGTCCAACCCAGACATGCCAATAACTTATCAAATAGGACGGTATGCAGGTTCTAACGCAAGTATTAACAATAATGCGTTTTTAAGACGGTTTGGGGTATCTGTTTGGATTAATGGTGGTGACCCTAGACCAGTAAAAATTGAGTCTTATGGATCAGGTAGTCCTAGAACTGCTAATACAAATAACTATGTACCAGTTTTAGCTATTGCTGTTAAGCCATTTGTGTACAACAAAGAAGTAACCAACAATGAGCGTCCACAAAAATCTAGGGTTTATCCGTATAAACTATATGCTAGTAGTGGTGGTCAAGTATCTGAAATTTATCTTTGCAAGCTGTCCTCTGATAACTACACTGCTTTAAATATTGGGAATCTTACCTGGGCTACCGCCAAAACAGACTCAGAACAATTAAAAGTAGTTGCTACAAATAGCACTTTTAACGCAACTACTATAGCTTTTAACGCTGGCTATCCTACTGGTATTGGCGGTAAGCAAATTGGCCCTTTTTATTGCGGAACCAACGAAGGTACAGAGATAGACTTAACTGATATTTTTGACCCTCAAAGAGAGTTGTTGGGGCGTGCGGAAGCCACTGCAACCGGTGTCACCGGTGATATTCTATTGGTAATAGCCAGGTCTCTAGGTGGCACTAGTTCTAACGTAGCAGCTAGTCTTGTTTATGGAGTGCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6cbbd34b42cdb1ddaf6501091f2d3f1a76aeb9acfd717334abcf57ced14146e7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3760
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50